Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0544 ATGGATGGGGTTCACACAGGGAAAGTGCTTGGTAAATGCATGGTACCAGGTGCTGGCAGAAGCATGAAAACATTGACCATTGTTGATTACTATATATATGCATCATGTTACAGAGAGAGTACTATAGTAGAAAACACATACATACATACATACATGGCTATTAATGTAAAGCTTCCGCTGATGCTTCTTGTTGCTGTTGCAGCTCTCCATTATTGTGCAGCAGCTAACTGCACACGTAGCTGCGGCTCTGTGAGCATTCCATTCCCGTTTGGGACCACAAAGGAGTGCTCCCTGGCCCCCGAATTCCTTATCTACTGCACCAAACATGTCCCACACTTACAAGACAATCACCTGCGTCTGCGAAGCATCGACGTCGATCACGGCGAACTCCGCGTTTCCTTGCCGGTAGCCAGTGATTGCTACTTCACCAACAGCAGCAGCAAGGGGGGAAAGTTCTTCAACAATGAAACCGATAGGAGCGTGTTTCTGGGAAATTATTATAGCATCTCAACGAGCCAAAACTTGTTCACAACGGTTGGCTGTGAAACACTTGGATTAGTGGTGGGAAGTGATTCAGAGGCAGAGAGAATGAGACCGTTTCCTAAGACATGCTTATCATACTGCGACCGACGTAAAGACGCAAAGGATGGGGAGTGCACCGGAACCGGTTGTTGCAATACTTCTATACCCGATGCCTCACCACAAGGCTTATCGTACATTTATTATTCTTTTGAGAATTCCATTTTGAATAACAGTGAAATATTCGTTGACTTCAACAACCCTTGTGGTTATGCTTTTGTGGTGGAAAAAGGAGAGTACAAGTTTGACACCACACATCTGAAACAGTTGGAGACTACTACGTTCCCAGTGGTGCTGGATTGGAGTGTAGGGAACCTGAAATGTAAAGAAGCTCAGAAGAAACCTTCCACCTATGCCTGTAAGGCGCACAACAGCACGTGTCACGATTCCACCAAGCGTCGTGGGTACAGTGGAGATGGCGAACTTCACGGAACTGGATGCACTCCCAACAGATCCTTCTCCAAACTTATCACACACACAATTCCATTGATTGTCAGTTTAAGCATCTTAGTGTTATTTGTGGCGAGCTTTAATGCTTATTGTGGATTGAGAAAAAGGAAGCTCAACAAACTTAAAGAACAGTTTTTTCAACAAAATGGTGGTCTATTGTTACAACAAAAAATTGCCAAACATAGAGGTTCAATTGAAACAACTAAAATCTTTAGCATAGAAGAGCTAAAGAAGGCCACCAACAACTTTGATGAAGTCAAGATCTTAGGCCGAGGAGGCTATGGAATAGTTTACAAAGGATTATTACAAGACAACACAACTGTTGCAATCAAAAAGTCCAAAATCAGTGACCAAAGCCAGATTGAACAATTCATCAATGAGGTGGTTATACTTTCCCAAATCAACCATACAAATGTGGTCAAACTTTTGGGGTGTTGCTTAGAGACACAAGTTCCATTGCTTGTTTATGAATTCATTCAAGGTGGTACTCTTGATGATCATCTTCATGGTCAGAACCAATCTTTAAAGCTTAACTGGAAAACAAGATTGAGAATAGCAGCAGAAACTGCTGGGGCTTTGGCATACTTGCATTCTGCTACTTGTCCACCAATCATACATAGAGATGTTAAAACTACCAACATACTTCTTGATCATAATCTCAAAGCAAAGGTTTCTGATTTCGGAGCTTCAAAGATTGTTCCCCTTGATAAAGCCGAACTATCCACCCTGGTGCAAGGGACTGTGGGGTATCTAGACCCTGAATACTTCCACACAAGCCACTTAACAGAAAAGAGTGATGTGTATAGTTTCGGAGTCGTTCTAGCAGAGTTACTTACAGGACGAAAAGCACTTTGTTTTGATTTGCCTGAGGATGATAGAAACCTTGCAATGTACTTCATTTCTTCAATGAATAAGGGTCGCTTACTTCAGATTCTGGACAATCAGATAAGAAATGAGGCAAAGCCCGAGCAGCTCATGGAATTTGCCAATATTGCAAAACGATGTTTGAGGTTGAAGGGAGAAGAAAGACCTACCATGAAAGAAGTGGCAACTGAACTTGAGGGACTTAGAATAATGGAAAATCATAGGTGGGAAAGTGATAGATCGTCTTTGGAAGAGACTGAAGATTTGCTCAATGCATCACCATCATCATCATCATTGGCTTTTTACATTTACAAGGTTAAGAATCTTCTAACTCCACCAAAATGCCAAAAGCTAGATTCCATGTCATTAGGTAGTGAAAGACTGGAAGATGACAATGCAAGTTGA 2298 0.4199 MDGVHTGKVLGKCMVPGAGRSMKTLTIVDYYIYASCYRESTIVENTYIHTYMAINVKLPLMLLVAVAALHYCAAANCTRSCGSVSIPFPFGTTKECSLAPEFLIYCTKHVPHLQDNHLRLRSIDVDHGELRVSLPVASDCYFTNSSSKGGKFFNNETDRSVFLGNYYSISTSQNLFTTVGCETLGLVVGSDSEAERMRPFPKTCLSYCDRRKDAKDGECTGTGCCNTSIPDASPQGLSYIYYSFENSILNNSEIFVDFNNPCGYAFVVEKGEYKFDTTHLKQLETTTFPVVLDWSVGNLKCKEAQKKPSTYACKAHNSTCHDSTKRRGYSGDGELHGTGCTPNRSFSKLITHTIPLIVSLSILVLFVASFNAYCGLRKRKLNKLKEQFFQQNGGLLLQQKIAKHRGSIETTKIFSIEELKKATNNFDEVKILGRGGYGIVYKGLLQDNTTVAIKKSKISDQSQIEQFINEVVILSQINHTNVVKLLGCCLETQVPLLVYEFIQGGTLDDHLHGQNQSLKLNWKTRLRIAAETAGALAYLHSATCPPIIHRDVKTTNILLDHNLKAKVSDFGASKIVPLDKAELSTLVQGTVGYLDPEYFHTSHLTEKSDVYSFGVVLAELLTGRKALCFDLPEDDRNLAMYFISSMNKGRLLQILDNQIRNEAKPEQLMEFANIAKRCLRLKGEERPTMKEVATELEGLRIMENHRWESDRSSLEETEDLLNASPSSSSLAFYIYKVKNLLTPPKCQKLDSMSLGSERLEDDNAS* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0544 765 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 49 329 IPR045274 GO:0007166
Amo08g0544 765 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 327 727 IPR045274 GO:0007166
Amo08g0544 765 Pfam Wall-associated receptor kinase galacturonan-binding 77 132 IPR025287 GO:0030247
Amo08g0544 765 SMART serkin_6 426 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g0544 765 Gene3D Phosphorylase Kinase; domain 1 397 501 - -
Amo08g0544 765 SUPERFAMILY Protein kinase-like (PK-like) 410 702 IPR011009 -
Amo08g0544 765 ProSitePatterns Serine/Threonine protein kinases active-site signature. 547 559 IPR008271 GO:0004672|GO:0006468
Amo08g0544 765 ProSiteProfiles Protein kinase domain profile. 426 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g0544 765 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 327 727 - -
Amo08g0544 765 CDD STKc_IRAK 432 699 - -
Amo08g0544 765 ProSitePatterns Protein kinases ATP-binding region signature. 432 455 IPR017441 GO:0005524
Amo08g0544 765 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 49 329 - -
Amo08g0544 765 Pfam Protein tyrosine and serine/threonine kinase 430 696 IPR001245 GO:0004672|GO:0006468
Amo08g0544 765 Gene3D Transferase(Phosphotransferase) domain 1 502 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0544 Amo-Chr8 9938617 9943299 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0544 76 723 Receptor kinase-like Gene Family AT1G21250 43.182 2.44e-168 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Amo08g0544 PK_Tyr_Ser-Thr 3.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0544 - - ahf:112763858 1244.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0544 08 9938617 9943299 Amo17g2637 17 125786345 125789610 hybridization