Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0519 ATGGATGATAACAACTTATCAGATATCTTCCAAGACAAAGACTTTGGTGGAGACGATCTCTTYGCCATCTTGGARAGCCTCGATGACTTCMCTCCCACCAACACCGKACAATTTYCCACCCTACTTGAATCATCATCACTGCCCTCGCCTCCAACCAAACGACGGAAACTACTTGTTCCGCCGCCACCGCCTTCTCCCAAYGCCGCCGAGGATGGACAACAAAGGATGTCTCATATCACGGTCGAGCGCAACCGTAGAAAGCAGATGAACGAGCATTTGTCCGTCCTCAGATCCCTCATGCCTTGCTTTTACGTCAAGCGAGGTGATCAAGCATCCATAATTGGAGGGGTGGTTGATTACATCAACGAGTTGCAACAAGTTCTTCAAGCACTTGAAGCAAAGAAACAAAGAAAAGTTTACACTGATCATGTTCTAAGCCCTAGGCTCGTCTCAAGCCCAAGGACTTCACTATCACTACCACTCAGCCCACGGAAACCACCCTTGAGCCCTAGGCTAAGCCTGCCCATAAGCCCAAGGACTCCTCAACCAGGTAGCCCATACAGGCCGCCAGCGCCCTGCAGGCTGTTGCAGCCAGCGGCCACCGCGGCCGCAGCAGCAAGCAGTTACATTTCACCGGCGGCGTCGATATCGAACTCTCTTGAGCCATCTCCAACCACGTCTTCCGCCTCCTCCATCAATGATGACATCAACGAGCTCGTTGCGAATTCAAAATCTGCCATGGCTGAGGTTGAGGTCAAGTTCTCGGGTCCTCACCTTCTTCTGAAAACGGTGTCGCAGCGAATTCCCGGGCAAGCATTGAAGATCATTTCAGCGCTTGAAGATCTTGCGCTTGAAATTCTTCAAGTCAATATCAGCACTGCTGATGAAACCATGCTTAACTCATTCACTATCAAGATTGGAATTGAATGCCAACTCAGTGCGGACGAACTAGCCCAACAAATCCAGCAAACATTCTGCTAG 981 0.5005 MDDNNLSDIFQDKDFGGDDLFAILESLDDFXPTNTXQFXTLLESSSLPSPPTKRRKLLVPPPPPSPNAAEDGQQRMSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQALEAKKQRKVYTDHVLSPRLVSSPRTSLSLPLSPRKPPLSPRLSLPISPRTPQPGSPYRPPAPCRLLQPAATAAAAASSYISPAASISNSLEPSPTTSSASSINDDINELVANSKSAMAEVEVKFSGPHLLLKTVSQRIPGQALKIISALEDLALEILQVNISTADETMLNSFTIKIGIECQLSADELAQQIQQTFC* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0519 326 MobiDBLite consensus disorder prediction 163 193 - -
Amo08g0519 326 Gene3D - 66 151 IPR036638 GO:0046983
Amo08g0519 326 Coils Coil 117 141 - -
Amo08g0519 326 CDD bHLH_AtFAMA_like 76 142 - -
Amo08g0519 326 PANTHER TRANSCRIPTION FACTOR FAMA 49 326 IPR044283 GO:0003700|GO:0010052
Amo08g0519 326 SMART finulus 79 130 IPR011598 GO:0046983
Amo08g0519 326 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 49 326 - -
Amo08g0519 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 124 IPR011598 GO:0046983
Amo08g0519 326 MobiDBLite consensus disorder prediction 153 193 - -
Amo08g0519 326 MobiDBLite consensus disorder prediction 43 75 - -
Amo08g0519 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 149 IPR036638 GO:0046983
Amo08g0519 326 Pfam Helix-loop-helix DNA-binding domain 74 125 IPR011598 GO:0046983
Amo08g0519 326 MobiDBLite consensus disorder prediction 54 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0519 Amo-Chr8 9507941 9510064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0519 10 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 53.153 2.84e-91 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo08g0519 HLH 7.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0519 K20558 - gmx:100808130 349.362