Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0518 ATGGAGAAGATGATGATGATGGGATTGGGAGAAACGAAGAAGTTGAGAGAGGAGCTAGTACAAGGTTTGGAACTGGCGAGACAGCTCCAAATCCATCTTCACGTGGCTTCCACTCCCCATGAAACCCGTGACTTGTTGATCCAAAACATTATCTCTGCTTTTGAAAACGCCCTCCACATCCTCAAATGGACACCGCCACCCGCCGCCGCCGTGGACCCCTCAATCTCACCTGCAATCAGAATGTCCCAAGAGTCTCCACCTTTGAGCACCGGCAGCCCCCGCAGCGAAGACTCCGATAGAGATTTAAGGGATCACGATCCCAATGCTTCCAAAAAAAGGAAGAGTTTGCCAAGATGGACAAAACAGATTCGAGTTGGTCCGGGAATGGGAGTGGAAGGGCCTCTTGACGATGGATACAGTTGGAGAAAATACGGCCAGAAAGACATTCTTGAAGCCACCTATCCAAGAGGGTACTATAGGTGCACACACAGAAATGTTCAAGGATGCTTGGCAACAAAGCAAGTGCAAAGATCCGATGAAGACCCCAACATGTTCGAAATCACATACCGAGGATCACACACATGCACCATGGCTTCATCATCATCCAACAGTGCTTCACTTCCTGCACCCACAACTAGTCCAAGGAACMCAAAYAATAATGTTCTGCAAAGCCTTGACCAACAACCACCTATGATGAATGAATTACTCTTGAACCTCAGRGCAGGGTTGAGGGTCCAAACAGAGAATCTGGATAACTGTTCTTCCTTCAACTTCCCTAGTAATTCAAACCATGTTTTCTCATCACAAACACCACCACCACAACCTCAACCTATGCTTGGTGATAATAATTTTCCTTCCTATATGTCCCCTGCTACTTCTGGGATAAGCCAATTCTCAATGWCTTCTGGGAATCAGATCAATGATATGATCTCTGCTTCAAATTCAAACTCACCAACCGTTGGATTAGACTTTTCCTTTGACCAATTTGATTTGGACGGTCATAACAACTTCACATTCGGTAACCCACAATTTTTTCCTTAG 1041 0.4563 MEKMMMMGLGETKKLREELVQGLELARQLQIHLHVASTPHETRDLLIQNIISAFENALHILKWTPPPAAAVDPSISPAIRMSQESPPLSTGSPRSEDSDRDLRDHDPNASKKRKSLPRWTKQIRVGPGMGVEGPLDDGYSWRKYGQKDILEATYPRGYYRCTHRNVQGCLATKQVQRSDEDPNMFEITYRGSHTCTMASSSSNSASLPAPTTSPRNXNNNVLQSLDQQPPMMNELLLNLRAGLRVQTENLDNCSSFNFPSNSNHVFSSQTPPPQPQPMLGDNNFPSYMSPATSGISQFSMXSGNQINDMISASNSNSPTVGLDFSFDQFDLDGHNNFTFGNPQFFP* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0518 346 MobiDBLite consensus disorder prediction 78 93 - -
Amo08g0518 346 MobiDBLite consensus disorder prediction 280 300 - -
Amo08g0518 346 Pfam WRKY DNA -binding domain 136 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo08g0518 346 ProSiteProfiles WRKY domain profile. 130 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo08g0518 346 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED 5 343 - -
Amo08g0518 346 MobiDBLite consensus disorder prediction 72 131 - -
Amo08g0518 346 MobiDBLite consensus disorder prediction 94 113 - -
Amo08g0518 346 MobiDBLite consensus disorder prediction 261 300 - -
Amo08g0518 346 Gene3D WRKY domain 121 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo08g0518 346 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 343 IPR044810 GO:0003700
Amo08g0518 346 SUPERFAMILY WRKY DNA-binding domain 134 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo08g0518 346 SMART WRKY_cls 135 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo08g0518 346 MobiDBLite consensus disorder prediction 199 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0518 Amo-Chr8 9501908 9503635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0518 1 259 WRKY Transcription Factor Family AT4G23810 39.024 2.97e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo08g0518 WRKY 7.4e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0518 - - gmx:100812027 366.696