Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0504 ATGGATTTTTCTTTGATTGGAGTTTTGTTCATGTTCTGCTTCAATGTAGAGTTAGCACTAGCCTCTGATACATGTCAAGTTTTGTCATGTGGAAATCAAGAAATCCGGTTCCCTTTCAGAATCAAAGGCCGGCAGCCGCAAAACTGTGGCTACCCGGGCTTTGATCTGGTTTGCACAGACAGTAATGAGACTCTCATTGAGCTCCATGATTCACTGAATTTCAGTGTCAACAAGATTGACTATAGAAAGCAAACAATTGAGTTATCATATCCTCATAACGGTTGCTTTCCTAGGCTTCTTCATAGCCTCAAACTTTCAGCTTCACCTTTCAACTTCAACATGAAAGCTGATGATTACTATGGTGACTATTATTTCTTTAACTGTTCAGCACTTGAAAGAGATTACATGGAAGGTTACTTCATTCAATGCCTAAGCACCTCGGCTAGTAGCATATATGCAATTCCATCTAGTTCAAAAATCGAGTACTTGCCTCTCTCATTCTGCACCAAAATGTTCAATGTTTCATCAGTCCCGAGAATATTCGTTATTGAGGATGCTCATCTTCATCTGAAATGGTCTGAACCAGACTGTGGACATTGTGAATCAAAAGGGAACAGGTGTAGTTGGAATAGGACAAAGAATGAATTCAGTTGTTTAGACAACCATAAAGGACCATCAACAGCTCTGGTAACAACAGGATCAGTACTGGGATCATTTTTCCTTATCCTGCTAACCGGTGCGATTTACTACATCTATGATACTTGCATAATACAAAAAGAAAAAGAAGCAATTATTGAAAAATTTCTTGAAGACTACAGAGCTCAAAAGCCAACCAGGTACTCTTATGCTGAAATCAAGAGAATTACCAATAACTTCAGCGACAAGTTAGGAGAGGGAGCCTATGGAACTGTCTTCAAAGGAAGCATCTCAAAAGAATTTACTGTTGCTGTGAAAATGCTGAATAATTCCCAGGGAAATGGGGAAGAGTTTGTCAATGAAGTTGGTATAATTGGTAAAATCCACCATGTCAATATTGTCCGGTTGGTTGGTTTTTGTGCTGATGGGTTCAGAAGAGCTCTTATCTATGAGTTCTTGCCGAATTCTTCGCTGCAGAAGTTCATAAATTCGCCGGACAACAAGCAAAACTTTTTAGGCTGGAAGAAGTTGCAAGAAATTGCTTTAGGTGTAGCTAAAGGTATTGAGTATCTTCACCAAGGTTGTGATCAACGTATTCTCCATTTTGATATCAAGCCTCAAAATGTGTTGCTAGACCACAATTTTACTCCTAAAATTTGTGATTTTGGTTTAGCTAAATTATGTTCCAAGGATCAAAGTGTAGTGTCAATGACAGCAGCTAGAGGAACTTTGGGATACATTGCGCCCGAAGTTTTCTCAAGAAACTTTGGAAATGTATCTTACAAGTCTGATGTTTATAGCTACGGAATGATGCTGCTTGAAACAATTGGAGGGAAGAAGATCACAGAGGATGTAGAAGAAAATAGCAGCCATATTTACTACCCTGAATGGATTCATAATCTTTTGGAAGAGAAGGAAGAAATGAGAATTCATATTGAAGATGAAGGGGATGCTAAGATTGCTAAGCAGCTAGCAACAGTGGGGCTTTGGTGCATCCAATGGCATGCAGTGGATCGACCATCAATGCAGACAGTGGTTCAAATGTTGGAGGGAGACCAAGACACATTACCAATACCTCCTAATCCTTTTGCTTCCACAGGGCCTTCAAGAAAATATTCTAAAATTGGTGTGCCTGCAAGACAGATTATCCAAGATTTAGAAGTGATCCAAGAATTAGACTGA 1818 0.3927 MDFSLIGVLFMFCFNVELALASDTCQVLSCGNQEIRFPFRIKGRQPQNCGYPGFDLVCTDSNETLIELHDSLNFSVNKIDYRKQTIELSYPHNGCFPRLLHSLKLSASPFNFNMKADDYYGDYYFFNCSALERDYMEGYFIQCLSTSASSIYAIPSSSKIEYLPLSFCTKMFNVSSVPRIFVIEDAHLHLKWSEPDCGHCESKGNRCSWNRTKNEFSCLDNHKGPSTALVTTGSVLGSFFLILLTGAIYYIYDTCIIQKEKEAIIEKFLEDYRAQKPTRYSYAEIKRITNNFSDKLGEGAYGTVFKGSISKEFTVAVKMLNNSQGNGEEFVNEVGIIGKIHHVNIVRLVGFCADGFRRALIYEFLPNSSLQKFINSPDNKQNFLGWKKLQEIALGVAKGIEYLHQGCDQRILHFDIKPQNVLLDHNFTPKICDFGLAKLCSKDQSVVSMTAARGTLGYIAPEVFSRNFGNVSYKSDVYSYGMMLLETIGGKKITEDVEENSSHIYYPEWIHNLLEEKEEMRIHIEDEGDAKIAKQLATVGLWCIQWHAVDRPSMQTVVQMLEGDQDTLPIPPNPFASTGPSRKYSKIGVPARQIIQDLEVIQELD* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0504 605 Pfam Wall-associated receptor kinase galacturonan-binding 25 88 IPR025287 GO:0030247
Amo08g0504 605 Gene3D Transferase(Phosphotransferase) domain 1 365 568 - -
Amo08g0504 605 SMART serkin_6 290 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g0504 605 PANTHER RECEPTOR-LIKE KINASE 22 604 - -
Amo08g0504 605 Gene3D Phosphorylase Kinase; domain 1 264 364 - -
Amo08g0504 605 SUPERFAMILY Protein kinase-like (PK-like) 273 562 IPR011009 -
Amo08g0504 605 Pfam Protein kinase domain 293 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g0504 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672|GO:0006468
Amo08g0504 605 PANTHER RUST RESISTANCE KINASE LR10-RELATED 22 604 IPR045874 GO:0004672
Amo08g0504 605 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Amo08g0504 605 ProSiteProfiles Protein kinase domain profile. 290 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0504 Amo-Chr8 9266494 9269432 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0504 1 581 Receptor kinase-like Gene Family AT1G66910 35.925 4.28e-116 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo08g0504 Pkinase 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0504 - - lang:109328752 828.935