Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0500 ATGAATTTTCAGCAAGACAAGTTTGTTAGATTTCAGGATTGGAGCTCGGAGAAGAGTTCCGAGAGCAACTATCCCACACTTAATGGAACACGATCGGGGAGAATCAGAGCCACATTTGGTTCGGTTTCAAAGAAGTTTCAAAGGGGCTTTGAGTCTAGTTCGGAAAGGATAAAGAGAATTAGGAAATCCTTCAAATCTTTGCCCTATAACAATGTTCTTGCTAAGAGTTTCAGTTCTAGAAAGAAAATCCTTGATCCGCAAGGTCCTTTCCTTCAAAGATGGAACAAGATATTTGTATTGTCTTGCCTTATTGCTGTATCACTGGATCCTTTGTTCTTCTATGTCCCCGTGATCGATGATGACAGGAAATGTCTTTCACTGGACAAAAAAATGGAAATTACAGCAACAGTTTTGAGATCTTTCTCTGATATTTTTTATATAATCCACATAATTTTCCAATTTCGTACTGGATTCATTGCTCCCTCTTCTCGAGTCTTTGGAAGAGGGGTTTTGGTTGAAGATTCTTGGGCAATAGCTATGAGGTATCTGTCATCATACTTCCTAGTTGACATTCTTGCGGTTCTTCCCCTCCCACAGGTGGTGATCCTAATTATCATTCCAAAGATGAAAGGGTTTGAATCATTGAATACAAAAAACTTGCTGAAGTTTGTGGTCTTCTTCCAATATGTGCCACGGTTCTTGAGAATAATTCCATTATATAAAGAGGTTACAAGGAGCTCTGGCATTCTAACTGAAACAGCTTGGGCTGGAGCTGCATTTAATCTGTTTCTTTACATGCTCGCAAGTCATGTTCTTGGTGCCTTTTGGTACTTGTTTTCTATAGAAAGAGAAACCACATGCTGGCAAAATGCCTGTCGAAGAACCAAGTGTAACAAGGCAGAAATATACTGTGATGATTATCAGGGCTCAATCTCGACATTATTGAATAATTCTTGCCCGATACAGGAGCCAAATACAACACTCTTCGATTTTGGAATATTCCTTGATGCCCTTCAATCTGGCGTTGTGGCGTCAGAAGATTTCCCACAGAAATTCTTTTATTGTTTTTGGTGGGGCCTCCAGAATTTGAGTTCTCTTGGGCAGAACTTGAAAACAAGTACCTATGTATGGGAGATCTGCTTTGCAATTTTCATTTCTATTGCTGGCCTGGTACTGTTTTCATTTCTCATCGGAAATATGCAGACATATCTGCAATCAACAACAACCAGGTTGGAGGAGATGAGAGTGAAAAGGAGAGATGCAGAACAGTGGATGTCTCATCGCTTACTCCCCGACAGCCTGAGAGAGAGAATCAGACGACACGAACAGTACAAATGGCAAGAAACCAGAGGTGTTGATGAAGACAATTTGATCCGCGATCTTCCCAAGGATTTAAGAAGGGACATTAAACGTCATCTTTGCTTGGCTTTGCTGATGAGAGTGCCAATGTTTGAGAAAATGGATGAGCAACTTTTAGATGCAATGTGTGACCGTCTCAAGCCAGTTCTGTACACAGAAGAAAGCTGCATTGTCCGCGAAGGAGATCCGGTTGACGAGATGCTCTTCATAATGCGAGGAAAGCTATTGACTGTGACAACAAATGGTGGGAGAACAGGTTTCTTTAACTCGGAATATCTAAAGGCCGGAGACTTCTGTGGAGAAGAGCTCCTCACATGGGCACTAGATCCTAATCCCTCATCCAATCTTCCCACCTCAACTAGGACCGTCCAAACTCTTTCGGAGGTGGAAGCATTCGCTCTAAAGGCCGACGACTTGAAGTTCGTTGCATCTCAATTCCGGCGACTTCACAGCAAGCAGCTTCGCCACACTTTCAGGTTCTACTCGCAGCAATGGCGCACTTGGGCTGCTTGTTTCATACAAGCGGCGTGGAGGCGTTACAGCAAACGGAAGCTGGAAGAGAGTCTTAGGGAAGACGAGAATAGGCTGCAAGATGCATTGGCCAAGGCTGGTGGTAGCTCGCCAAGTCTTGGTGCCACAATATATGCATCTAGATTCGCAGCGAATGCTCTTAGAGCTATTCCAAGCTCACCTCCCTCTTCAGAAATGTGGGCAATGCAAAAGCAGCTGAATGCATCTGCACAACAACAGAAAGAGAATCGTCAGAGCTAG 2130 0.4329 MNFQQDKFVRFQDWSSEKSSESNYPTLNGTRSGRIRATFGSVSKKFQRGFESSSERIKRIRKSFKSLPYNNVLAKSFSSRKKILDPQGPFLQRWNKIFVLSCLIAVSLDPLFFYVPVIDDDRKCLSLDKKMEITATVLRSFSDIFYIIHIIFQFRTGFIAPSSRVFGRGVLVEDSWAIAMRYLSSYFLVDILAVLPLPQVVILIIIPKMKGFESLNTKNLLKFVVFFQYVPRFLRIIPLYKEVTRSSGILTETAWAGAAFNLFLYMLASHVLGAFWYLFSIERETTCWQNACRRTKCNKAEIYCDDYQGSISTLLNNSCPIQEPNTTLFDFGIFLDALQSGVVASEDFPQKFFYCFWWGLQNLSSLGQNLKTSTYVWEICFAIFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRHEQYKWQETRGVDEDNLIRDLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPVLYTEESCIVREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPNPSSNLPTSTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKRKLEESLREDENRLQDALAKAGGSSPSLGATIYASRFAANALRAIPSSPPSSEMWAMQKQLNASAQQQKENRQS* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0500 709 MobiDBLite consensus disorder prediction 683 709 - -
Amo08g0500 709 Gene3D Helix hairpin bin 409 474 - -
Amo08g0500 709 Gene3D - 97 407 - -
Amo08g0500 709 Pfam Cyclic nucleotide-binding domain 504 594 IPR000595 -
Amo08g0500 709 ProSiteProfiles cAMP/cGMP binding motif profile. 483 567 IPR000595 -
Amo08g0500 709 CDD CAP_ED 483 614 IPR000595 -
Amo08g0500 709 SUPERFAMILY cAMP-binding domain-like 412 605 IPR018490 -
Amo08g0500 709 SMART cnmp_10 483 614 IPR000595 -
Amo08g0500 709 Pfam Ion transport protein 93 410 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Amo08g0500 709 SUPERFAMILY Voltage-gated potassium channels 85 405 - -
Amo08g0500 709 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 6 680 - -
Amo08g0500 709 Gene3D Jelly Rolls 481 601 IPR014710 -
Amo08g0500 709 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 680 - -
Amo08g0500 709 Coils Coil 635 655 - -
Amo08g0500 709 ProSiteProfiles IQ motif profile. 619 648 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0500 Amo-Chr8 9213752 9219281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0500 1 680 Ion Channels AT5G53130 80.556 0.0 1129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0500 K05391 - gmx:100817516 1212.59