Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0484 ATGAGCTTTCCCATAATCCTCCTCCTTCTTTTCTTCGTCTCCTTCAAGCCTCCTCAAAAACACGTTATTGTGTCATCAACCACACAAGACACATGCTTGGATGCTGTTTGCAATCTAAGGGAGCCAGTAATTCGATTCCCTTTCCAAATAGAACCAAACTCATCATCATCATGTGGGTACCCAGGTTTCACAGTAACATGCAACAACCGTGGCCAAACACTCCTCAACCTACCTCATTCAGGAGGAGAATTCAGCATCAAAGGGATAGACTACGACACTCAACAAGTGTGGGTAAACGACCCTGACAATTGCCTTCCAAAACGCATACTCTCTCTCAACCTCTCTTCATCCCCATTCGAAGCCGTTTACAACCAAGAATTCACGTTCTTCAACTGTTCCATGAACTTGGAGTATCTCAAGCATAGGTACAATCCCATAGCTTGTCTCAGTGATCCAAAGCACGTGCTTTTTGCAACGTCTTCGTCAACCGTTGTTGTTTACTTGTCGTCGATTTGTAACGTGGTTAAGAGGGTGAAAGTGCCGGTTGGGGTGCCGTTTTACGAACATGTTGTGTCGTCTAACCTCAGCGATGATTTGAGGTTGTCGTGGGAATGGCCAGAGTGTGGGAGGTGTGAGTTACACGGTGGAAGATGTGGCTTTGAGAGCAACACCACTTCGCATGTTGTGTGTTTCAACGATTTCCCTTCAAAAGGGTTTTCTCGTTGTGCACAATATGCAATAGTTATAGGCTTAGGAGTACCAGCATTATTGTGCTTCATTGGGATATTGAGTTGCCTGTGCAGCAAGCTCAAAATCTTAGCCCACCGTTGGGTCTGGGACCGTCAAACTGTACCAGATTTCGAGCCCCTTATTAGCCCACAACAAACTATCATTTTGGGCCTAGATGGGCCAACTATTGAGTCGTACCCAAAAATGGTTGTGGGGGAGAGCCCAAATATTCTTCCGAAGCCCAATGACAACACATGCCCAATATGCTTGTCGGAGTACAAGCCCAAAGAGACAGTGAAAAGAATACCTGAATGTCTTCATTGCTTTCACGCTCAATGTATTGATGAGTGGCTTCCATTGAATGCTTCTTGCCCAATTTGCCGAACTTCTCCCAACAAGTTACCTGCAGCAGCTTAA 1146 0.4555 MSFPIILLLLFFVSFKPPQKHVIVSSTTQDTCLDAVCNLREPVIRFPFQIEPNSSSSCGYPGFTVTCNNRGQTLLNLPHSGGEFSIKGIDYDTQQVWVNDPDNCLPKRILSLNLSSSPFEAVYNQEFTFFNCSMNLEYLKHRYNPIACLSDPKHVLFATSSSTVVVYLSSICNVVKRVKVPVGVPFYEHVVSSNLSDDLRLSWEWPECGRCELHGGRCGFESNTTSHVVCFNDFPSKGFSRCAQYAIVIGLGVPALLCFIGILSCLCSKLKILAHRWVWDRQTVPDFEPLISPQQTIILGLDGPTIESYPKMVVGESPNILPKPNDNTCPICLSEYKPKETVKRIPECLHCFHAQCIDEWLPLNASCPICRTSPNKLPAAA* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0484 381 Pfam Wall-associated receptor kinase C-terminal 171 232 IPR032872 -
Amo08g0484 381 SMART ring_2 329 370 IPR001841 -
Amo08g0484 381 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 379 - -
Amo08g0484 381 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 379 - -
Amo08g0484 381 Pfam Wall-associated receptor kinase galacturonan-binding 36 100 IPR025287 GO:0030247
Amo08g0484 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 376 IPR013083 -
Amo08g0484 381 SUPERFAMILY RING/U-box 324 374 - -
Amo08g0484 381 Pfam Ring finger domain 327 371 IPR001841 -
Amo08g0484 381 ProSiteProfiles Zinc finger RING-type profile. 329 371 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0484 Amo-Chr8 9086173 9088735 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0484 32 375 C3H Transcription Factor Family AT2G46495 35.632 4.79e-63 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0484 - - aip:107605919 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0484 08 9086173 9088735 Amo17g2523 17 123598259 123600885 hybridization