Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0477 ATGTCGTCGACGCTTCTGGAAGTGACACGTGCCTCGCACGAGGAAGTGGAACGGTTGGAAAGGGTGATAGTGAAGGACCTTCAGAATGAGCCAACTTCCAATAAAGACCGCTTGTTTCAGAGCCACCGCGTTCGGAACATGATTGACACCATTACTTCCACCACACACAAGCTTATTGAGATATATGAGGATAATGACAATGCCAGGAAGGACGAGATTGCTGCACTCGGAGGTCAAACTGCTACTGGAGTCAACAATGTATTTAGTGCGTTCTATGATCGTCTCAAAGAGGTTATTCCTTTTTTATTTTCTTTTCTTAGGATTTATTTATTTATTTTATATGGAGAGATACGAGAGTATCACAGGAAGCACCCGGTTGCCCGGGTTGTTGATGCTAATGATGATTATGAAGCACTCCTTAAAGAAGAACCTCAAATTGAGTTTAGTGGAGAGGAAGCTTTTGGCCGATACTTAGATATGCATGAGCTGTACCATCAATATATCAATTCAAAATTTGGAGAGCCAATTGAGTATTCTGCGTATCTTGATATTTTCCCAGAGGCAGACAAGATTCCACGCAAGAAGAAAATGACAAGGCAGTACAGAGAATATATGGAGAATCTTTTGGAGTATCTTTTGTATTTTTTCCAGCGGACAGAGCCCCTGCAAGATGTTGATCGAATTTTCTCGAAGGTAACAACTGAATTTGAAGAAAATTGGGCTGCTGGAAAGGTACACGGATGGGAGAATGAAAATCAGGACAATGGACACGCACCTGCTCAGCATGCTGCACTTGATCTTGATTATTACAGTACAGTTGAAGAGCTGATGGAAGTGGGTCCTGAAAGGTTAAAGGAGGCACTTGCAGCATTAGGACTTAAGACTGGTGGCACCATTCAGCAACGTGCAGAGAGACTCTTCCTCACAAAGCACACACCTCTTGAAAAACTGGACAAGAAGCATTTTGCTAAGGGAGCACGTGCTTCAGAGAAAAAAGGGGTTGCTCCAGTTCCACAAGAAGATGCAAATTCAAAAGAAATTGCATTAATGGAGGCCAAAATGAAGAAGCTGTGTGATTTGTTAGAAGACACTATTGCCCGAACAAAAGACAATGTCGTAAAGAAGCAAGCGCTGACGTATGAAGAAATTGAAGCAGAACGTGAGGAGGAAGAGACACAAGAGGACACTGAAAGTGAAGATGAGGAGCAGCAGATATATAATCCCCTAAAGTTGCCAATGGGATGGGATGGGAAGCCCATACCTTACTGGTTGTATAAGTTGCATGGTCTTGGTCAGGAATTTAAGTGTGAGATATGTGGGAACTACAGTTACTGGGGGCGTCGGGCTTTTGAACGTCATTTTAAAGAGTGGCGCCATCAGCATGGCATGCGATGCCTTGGTATACCAAATACCAAAAATTTCAATGAGATCACATCAATTGAGGAAGCAAAGGAACTTTGGAAGAAGATACAGCAAAGACAAGGAGTGAACAAGTGGCGCCCAGATTTGGAAGAAGAGTACGAAGACAAGGAAGGGAACATCTATAATAAGAAGACGTACACTGATTTACAGCGCCAGGGACTCATATGA 1590 0.4296 MSSTLLEVTRASHEEVERLERVIVKDLQNEPTSNKDRLFQSHRVRNMIDTITSTTHKLIEIYEDNDNARKDEIAALGGQTATGVNNVFSAFYDRLKEVIPFLFSFLRIYLFILYGEIREYHRKHPVARVVDANDDYEALLKEEPQIEFSGEEAFGRYLDMHELYHQYINSKFGEPIEYSAYLDIFPEADKIPRKKKMTRQYREYMENLLEYLLYFFQRTEPLQDVDRIFSKVTTEFEENWAAGKVHGWENENQDNGHAPAQHAALDLDYYSTVEELMEVGPERLKEALAALGLKTGGTIQQRAERLFLTKHTPLEKLDKKHFAKGARASEKKGVAPVPQEDANSKEIALMEAKMKKLCDLLEDTIARTKDNVVKKQALTYEEIEAEREEEETQEDTESEDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0477 529 Pfam SF3a60/Prp9 C-terminal 410 529 IPR024598 GO:0000398|GO:0003723|GO:0005681
Amo08g0477 529 PANTHER SPLICING FACTOR SF3A-RELATED 1 529 - -
Amo08g0477 529 PANTHER BNAA03G01920D PROTEIN 1 529 - -
Amo08g0477 529 MobiDBLite consensus disorder prediction 383 402 - -
Amo08g0477 529 Pfam Replication stress response SDE2 C-terminal 243 324 - -
Amo08g0477 529 MobiDBLite consensus disorder prediction 383 403 - -
Amo08g0477 529 ProSiteProfiles Zinc finger matrin-type profile. 434 465 IPR000690 GO:0003676|GO:0005634|GO:0008270
Amo08g0477 529 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 147 196 IPR031774 -
Amo08g0477 529 Coils Coil 373 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0477 Amo-Chr8 8976257 8980483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0477 1 529 C2H2 Transcription Factor Family AT5G06160 72.212 0.0 745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0477 K12827 - gmx:100815393 899.427