Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0468 ATGCACCCATTTGCATTAAGGGAGGTGCATCCTACGGCTGAAACGCCACCACCCAAGTGCAGGTGCACCGAAGACAACACCCCCAAAGTAATAATACCGAAAGAAGCTAAGGTTAACCCAAACCCCAAAACCCAATTAACTCCAAACATGAACTTTCCCATAATCCTCCTCCTTCTTTTCTTCTTCTCCTTGAAGCCTCCTCAAACACAAGACACATGCTTGGATGCTGTTTGCAATCTAAGGGAGCCAGTAATTCGATTCCCTTTCCAAATAGAACCAAACTCATCATCATCATCATGTGGGTACCCAGGTTTCACAGTAACATGCAACAACCGTGGCCAAACACTCCTCAACCTACCTCATTCAGGAGGAGAGTTCAGCATCAAAGGGATAGACTACGACACTCAACAAGTGTGGGTAAACGACCCTGACAATTGCCTTCCAAAACGCATACTCTCTCTCAACCTCTCTTCATCCCCATTCGAAGCCGTTTACAACCAAGAATTCACGTTCTTCAACTGTTCCATGAACTTGGAGTATCTCAAGCATAGGTACAACCCCATAGCTTGTCTCAGTGATCCAAAGCACATGCTTTTTGCAACGTCTTCGTCAACCGTTGTTGTTTACTTGTCGTCGATTTGTAACGTGGTTAAGAGGGTGAAAGTGCCGGTTGGGGTGCCGTTTTACGAACATGTTGTGTCGTCTAACCTCAGCGATGATTTGAGGTTATCGTGGGAATGGCCAGAGTGTGGGAGGTGTGAGTCACACGGTGGAAGATGTGGCTTTGAGAGCAACACCACTTCGCATGTTGTGTGTTTCAACGATTTCCCTTCAAAAGGGTTTTCTCGTTGTGCACGATATGCAATAGCTATAGGCTTAGGAGTACCAGCATTATTGTGCTTCATTGGGATACTGAGTTGCCTGTGCAGCAAGCTCAAAATCTTAGCACACCGTTGGGTCTGGGACCGTCAAACTGTACCAGATTTCGAGCCCCTTATTAGCCCACAACCAACTATCATTTTGGGCCTAGATGGGCCAACTATTGAGTCGTACCCAAAAATGGTTGTGGGGGAGAGCCCAAATATTCTTCCGAAGCCCAATGACAACACATGCCCAATATGCTTGTCGGAGTACAAGCCCAAAGAGACAGTGAAAAGAATACCTGAATGTCTTCATTGCTTTCACGCTCAATGTATTGATGAGTGGCTTCCATTGAATGCTTCTTGCCCAATTTGCCGAACTTCTCCCAACAAGTTACCTGCAGCAGCTTAA 1272 0.4615 MHPFALREVHPTAETPPPKCRCTEDNTPKVIIPKEAKVNPNPKTQLTPNMNFPIILLLLFFFSLKPPQTQDTCLDAVCNLREPVIRFPFQIEPNSSSSSCGYPGFTVTCNNRGQTLLNLPHSGGEFSIKGIDYDTQQVWVNDPDNCLPKRILSLNLSSSPFEAVYNQEFTFFNCSMNLEYLKHRYNPIACLSDPKHMLFATSSSTVVVYLSSICNVVKRVKVPVGVPFYEHVVSSNLSDDLRLSWEWPECGRCESHGGRCGFESNTTSHVVCFNDFPSKGFSRCARYAIAIGLGVPALLCFIGILSCLCSKLKILAHRWVWDRQTVPDFEPLISPQPTIILGLDGPTIESYPKMVVGESPNILPKPNDNTCPICLSEYKPKETVKRIPECLHCFHAQCIDEWLPLNASCPICRTSPNKLPAAA* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0468 423 Pfam Ring finger domain 369 413 IPR001841 -
Amo08g0468 423 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 54 421 - -
Amo08g0468 423 MobiDBLite consensus disorder prediction 1 20 - -
Amo08g0468 423 Pfam Wall-associated receptor kinase C-terminal 213 274 IPR032872 -
Amo08g0468 423 ProSiteProfiles Zinc finger RING-type profile. 371 413 IPR001841 -
Amo08g0468 423 SUPERFAMILY RING/U-box 366 416 - -
Amo08g0468 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 342 418 IPR013083 -
Amo08g0468 423 Pfam Wall-associated receptor kinase galacturonan-binding 77 142 IPR025287 GO:0030247
Amo08g0468 423 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 54 421 - -
Amo08g0468 423 SMART ring_2 371 412 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0468 Amo-Chr8 8838029 8840842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0468 73 417 C3H Transcription Factor Family AT2G46495 35.632 3.42e-61 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0468 - - adu:107460528 872.463