Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0452 ATGGAGTTCTTTAATAACGAACTCGATTCTTTCTCTAACGACATCGACAAAATAATGGGGATTTCACCTATGGATGATTTCGACGATTGGGCGCCATTGTTAACCTACAAAAGCACGCAGAAGCTTTTCTTGACCGACTTGCCAGAAGTGGATAACGACTTCGACGACCTTCCACCTTTGGACGATTTCAAGAAAGAGCGCGAGGAAGAGGATCAAGAACACAAGCAGTTACTACAACTTGTTCCGAGTAGTAGTACGATTAAGAACAAGAAGAGTGAGTTGGAATACGATGAGATTAAGAAACACTTCCATTTGCCAATCACAGAAGCTGCTAGTAAGATGAACATTGGTTTGACATTGTTGAAGAGAAGGTGCAGAGAACTCAGCATCAAGCGTTGGCCTCATAGGAAAATCAAGAGCTTGCATTTACTCATACAAACTCTCAAGGAGACAGGTTTGGACAATGAAGTTGAAATGTTGGAGGAAGAAATAAACATGTTGAAGCAAGTTCCAGAGACGGAAATCACACAAGAGACCAAGAAACTAAGGCAGGCTTATTTTAAAGCCAATTACAAAAGGAGGAAACTTTTGGCCTCTAACTCTTCTTGA 609 0.4105 MEFFNNELDSFSNDIDKIMGISPMDDFDDWAPLLTYKSTQKLFLTDLPEVDNDFDDLPPLDDFKKEREEEDQEHKQLLQLVPSSSTIKNKKSELEYDEIKKHFHLPITEAASKMNIGLTLLKRRCRELSIKRWPHRKIKSLHLLIQTLKETGLDNEVEMLEEEINMLKQVPETEITQETKKLRQAYFKANYKRRKLLASNSS* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0452 202 Coils Coil 60 80 - -
Amo08g0452 202 PANTHER PROTEIN RKD1-RELATED 64 201 - -
Amo08g0452 202 PANTHER PROTEIN RKD4 64 201 IPR044607 GO:0003700
Amo08g0452 202 Pfam RWP-RK domain 94 141 IPR003035 -
Amo08g0452 202 Coils Coil 150 170 - -
Amo08g0452 202 ProSiteProfiles RWP-RK domain profile. 83 163 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0452 Amo-Chr8 8597268 8598038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0452 94 198 AtRKD Transcription Factor Family AT5G53040 58.095 2.00e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Amo08g0452 RWP-RK 1.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0452 - - aip:107605887 366.311