Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0446 ATGCTACTGTTTTCCATAGAGTATTATCTTCTGGTTGCAATATCAGTGGAACCATTGAAAGTGCAAAACTGGATTCTTCCAGAGATGCCTGGGCTTATAACTGATTTTCAAATATCTCTCGATGACCAGTTTCCATACTTTGTGAATTGGCTTCATGGAAGTTCCATAGTCGCAATAGTAGAAGATGGTAACACTTGGCAATCTGAAGTTCCAGAAGTTCAGCATCTTTATGCCTCTTTTGAAGAAGAAATTGGAGTTTTTCAGTATGCAACTGCAATAACATCAAATGACATTGAGAAAATTCAGAAATTTCTAGACAAAACTGTTGGGTCAAGCTGTGAGAGATTAATCATTAAAACTTTAGATGAAGATTCTATATATGAACCTTCCAATCGGTCAAATAATTGGCTAAAACTGAAGAAAGATTATCTGGATAAATTTGGTACTATAGCTGCATTCCACGGATGTGGGAATCATACAGGTGATCATAAAGTATACTCTTCATGA 507 0.357 MLLFSIEYYLLVAISVEPLKVQNWILPEMPGLITDFQISLDDQFPYFVNWLHGSSIVAIVEDGNTWQSEVPEVQHLYASFEEEIGVFQYATAITSNDIEKIQKFLDKTVGSSCERLIIKTLDEDSIYEPSNRSNNWLKLKKDYLDKFGTIAAFHGCGNHTGDHKVYSS* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0446 168 Pfam ATP dependent DNA ligase domain 75 140 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Amo08g0446 168 PANTHER DNA LIGASE 1 74 161 - -
Amo08g0446 168 Pfam 56kDa selenium binding protein (SBP56) 12 54 IPR008826 GO:0008430
Amo08g0446 168 Gene3D - 68 148 - -
Amo08g0446 168 ProSiteProfiles ATP-dependent DNA ligase family profile. 74 151 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Amo08g0446 168 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 74 161 - -
Amo08g0446 168 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 75 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0446 Amo-Chr8 8534082 8535824 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0446 74 161 Core DNA Replication Machinery Family AT1G08130 63.830 2.40e-34 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0446 K10747 - ahf:112716277 222.631