Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0438 ATGGACTTGGAAAGCATCGAGTGTGTGTCATCCTCGGATGGCATGGACGAGGATGAGATCCACCCTCACCATCATTCTGAGTTTCCTTCCACAAAACCACGCAATGGAGGAGCCAATAACAACAATTCTGTGGGTCCCAATGCCATAACTCCTGCAACCAGCGTCCATGAGTTGCTGGAATGCCCTGTATGTACAAATTCAATGTACCCCCCAATTCATCAGATTCGATGGGGGATTGGTGAGGGAGAGCAAAATACCTCGGATTTGATTTTGGAGTTTGGATTTTCCTTACATGATGGAAGGGAATTGAGTCATGAATTTGGTTTTAGCAAGTTACCAAAATTTTGTTCAATTTGCAGGACACCTCTGCAAAACTTGTATGTATTTGCCAAAATGGGGTATAAAAGTTGTAACAAGTTGATTGATTTGCAGTGCCACAATGGGCACACGCTGTGTTCCACATGTAAAACAAGGGTACACAACCGGTGCCCCACTTGTAGACAAGAGCTTGGAGATATCAGGTGCCTAGCCTTGGAGAAGGTGGCTGAATCACTTGAGTTACCATGCAAGTACTATTCCCTTGGATGTCCAGAAATATTTCCATACTACAGCAAGCTTAAGCATGAGACTGTATGCAATTTTAGGCCATACAGTTGTCCTTATGCTGGATCAGAGTGTTCTGTTGTTGGGGATATTCCCTTCCTCGTCGCTCATTTGAGGGACGATCATAAAGTGGACATGCACACAGGATGCACATTCAACCATAGATATGTGAAATCAAATCCCAGGGAAGTAGAGAACGCAACCTGGATGCTCACAGTGTTTCATTGTTTTGGTCAGTACTTCTGCCTCCACTTTGAAGCTTTCCAGCTTGGGATGGCTCCTGTGTACATGGCATTCCTTCGTTTTATGGGTGATGAGAATGAGGCTCGGAACTATAGCTATAGCCTAGAGGTTGGGGCCAATGGCAGGAAACTCATCTGGGAGGGTACGCCTAGAAGTGTTCGGGATAGCCACCGGAAAGTTAGGGATAGTCATGATGGCCTCATTATTCAACGAAACATGGCCCTATTTTTCTCTGGTGGGGATAGGAAGGAGCTGAAGCTCAGAGTCACTGGAAGAATATGGAAGGAACAACAGAATCCAGATGGTGGAGTGTGCATACCAAATCTTTGTAGCTGA 1182 0.4535 MDLESIECVSSSDGMDEDEIHPHHHSEFPSTKPRNGGANNNNSVGPNAITPATSVHELLECPVCTNSMYPPIHQIRWGIGEGEQNTSDLILEFGFSLHDGRELSHEFGFSKLPKFCSICRTPLQNLYVFAKMGYKSCNKLIDLQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCIPNLCS* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0438 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT3 1 385 - -
Amo08g0438 393 MobiDBLite consensus disorder prediction 32 48 - -
Amo08g0438 393 MobiDBLite consensus disorder prediction 14 30 - -
Amo08g0438 393 CDD Sina 245 373 - -
Amo08g0438 393 ProSiteProfiles Zinc finger SIAH-type profile. 184 244 IPR013010 GO:0008270
Amo08g0438 393 SUPERFAMILY TRAF domain-like 184 376 - -
Amo08g0438 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 238 IPR013083 -
Amo08g0438 393 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 385 - -
Amo08g0438 393 MobiDBLite consensus disorder prediction 1 48 - -
Amo08g0438 393 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 239 372 IPR008974 GO:0005515
Amo08g0438 393 Pfam Seven in absentia protein family 173 372 IPR018121 GO:0005737|GO:0006511|GO:0007275
Amo08g0438 393 ProSiteProfiles Zinc finger phorbol-ester/DAG-type profile. 104 175 IPR002219 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0438 Amo-Chr8 8430920 8432733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0438 144 379 C3H Transcription Factor Family AT2G41980 81.780 4.71e-147 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0438 K04506 - rcu:8272429 543.117