Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0431 ATGTATCATAATGTAGTGCCACGTGTTGAGCCAAGAAAGATATCTATCTTGATTGAGATAAGCAGCAACGATGGAGTGGTCTCGGAAGATTTTAACAATCAACATTCAACAATGGCAAGCTTTTCAATCCCAATCCCAAGAAACGGTTTGTCCATACCCAGCTACTCAACCAAACGCCCTTCAACACTTCACACGCCCCTCAAAGTTTCTTGCTCTGAGTCTGGGACGAATTCCAATGGAATCAAGGGCCTAGCTTGTGGGATTCTTGCTGCTTGCGCTGTCTCTTCTTCTGCATTCTCTGTGACTGCTGCTAACCAGAGGCTGCCGCCGCTGTCAACTGAGCCGAACCGCTGCGAGCGAGCATTTGTTGGCAACACAATTGGGCAGGCAAATGGAGTGTATGACAAACCGTTAGATCTCCGCCTCTGCGACTACACGAATGAAAAATCCAACCTCAAAGGGAAGTCCCTGTCAGCAGCACTCATGTCAGATGCTAAGTTTGATGGTGCTGACATGACAGAAGTTGTAATGTCAAAGGCTTATGCTGTTGGTGCCAGCTTCAAAGGTGTGGACTTCTCAAATGCAGTGTTGGACCGTGTTAACTTTGGGAATGCGAATCTTCAAGGAGCTGTGTTTAAGAACACAGTGTTGTCAGGGTCTACTTTTGATGATGCTAAGCTGGAAGATGCAGTGTTTGAGGACACTATCATAGGTTACATTGATCTTCAGAAGCTATGCACAAATAAAACCATAAGTGATGAAGGGAGAGCTGAGCTTGGTTGTCGATCATGA 792 0.4596 MYHNVVPRVEPRKISILIEISSNDGVVSEDFNNQHSTMASFSIPIPRNGLSIPSYSTKRPSTLHTPLKVSCSESGTNSNGIKGLACGILAACAVSSSAFSVTAANQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPLDLRLCDYTNEKSNLKGKSLSAALMSDAKFDGADMTEVVMSKAYAVGASFKGVDFSNAVLDRVNFGNANLQGAVFKNTVLSGSTFDDAKLEDAVFEDTIIGYIDLQKLCTNKTISDEGRAELGCRS* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0431 263 Pfam Pentapeptide repeats (8 copies) 157 194 IPR001646 -
Amo08g0431 263 Pfam Pentapeptide repeats (8 copies) 197 234 IPR001646 -
Amo08g0431 263 Gene3D - 138 262 - -
Amo08g0431 263 PANTHER THYLAKOID LUMENAL 17.4 KDA PROTEIN, CHLOROPLASTIC 38 262 IPR044195 -
Amo08g0431 263 SUPERFAMILY Pentapeptide repeat-like 141 244 - -
Amo08g0431 263 PANTHER THYLAKOID LUMENAL 17.4 KDA PROTEIN, CHLOROPLASTIC 38 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0431 Amo-Chr8 8330606 8331970 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0431 - - aprc:113846743 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0431 08 8330606 8331970 Amo17g2468 17 122011424 122011955 hybridization
Amo17g1100 17 29414176 29419242 Amo08g0431 08 8330606 8331970 PCT
Amo07g1955 07 58526164 58531104 Amo08g0431 08 8330606 8331970 PCT
Amo08g0431 08 8330606 8331970 Amo17g1100 17 29414176 29419242 PCT
Amo08g0431 08 8330606 8331970 Amo07g1955 07 58526164 58531104 PCT