Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0428 ATGCTTGATAATCAAGGTGACAATGGTTTTGGCTTAGGATGTAGGCTTCAGAGAGTTAAGGTTCGGCAATGCAAGAAGCAAATGAAGGAATTGTCTGCTCTTTACATGAGACAAGATATCAAAGCGCATGAAGGTTCTATTACGACAATGAAATTCAGTCCTGATGGCCAGTATCTTGCAAGTGGCAGTGAAGATGGAGTTGTGCGCTTGTGGCAAGTGATTGAGGAGGATATGTCTAATGAAATTGACATTTCAGAAATTGACCCATCCTCCCTTTACTTTACAGTGAATAATCTCTCTGAATTGAAACCTCTGTTTATGGACAAGGAGAAAATCAACAAACTGAAGAGCATGAGAAAAACACAAGATTCAGCATGTATCATTTTCCCTCCTAAGATCTTCAGGTTGTTGGAGAAACCGTTGCATGAGTTCTATGGGCATCGAGGTGAAGTATTGGATCTCTCCTGGTCAAAGAATAATTATCTTCTCTCGTCATCCGTTGACAAAACTGTCCGTCTGTGGCAAGTGAAATCCGATAATTGCTTGAAAGTTTTCCCACACAGTAATTATGTGACATGCGTACAATTCAATCCCGTAGATGATAATTATTTCATTAGTGGATCTATAGATGGAAAAGTGCGCATCTGGACGATTCCTGATTGTCGTGTCATAGATTGGACTGACATTAGAGATATAGTAACGGCAGTATGTTATCGACCCGATGGCCAGGGAGGGATTATTGGGTCCATGGCAGGAAATTGTCGATTTTATAATGTATCAGATAATCAGTTGCAGTTGGATTCCCAACTATGTTTACTTGCTAAAAAGAAATTTACTGGAAGAGGGATAACAGGCTTTCAGTTTTTTCCACAAGATTGTAACAAAGTTATGGTTACCTGTGCGGATTCACAAGTCAGAATCCTTGACGGGCTTAATGTGATTGGCAAATACAAGAGCCTAGGCACAGGGAGCCCATTGAGTGCATCTTTCACTTCTGATGGCAAACATATATTATCAGCATCCGAGGATTCTAATGTATATATGTGGAATGTTAGTCAGGAYGAGTCTATTCCCATGAAAGCTAAGAAGATTTGGTCTTCTGAGCGGTTTTTCTCAAACGCTTCCATTGCAGTGCCTTGGCAAGGTTTGAAACCTCAGACCATGGAAAATGAACACCAATGGAATGTCCTAGATAAAACTTCACCCGAATCTGTACATCTTAACCCACCTGCTTCATTTTCCCTGGGTCAAGAGTATTTCTTGGAGGCTTTGCCTAAGGGATCTGCAACTTGGCCAGAGGAGAAGCTTCCAATTTCTAGCTCCAAGGCAAAAACATCTACAATGCTTAAATCCGAGTACAGGTTCTTGAAATCTTCATGCAGGAGTACCTCTCGTTCTCATGCATGGGGGATGGTCATTGTGACTGCAGGCTGGGACGGTCGGATAAAGACATTCCACAATTACGGATTACCCGTACCCGTTTGA 1485 0.4162 MLDNQGDNGFGLGCRLQRVKVRQCKKQMKELSALYMRQDIKAHEGSITTMKFSPDGQYLASGSEDGVVRLWQVIEEDMSNEIDISEIDPSSLYFTVNNLSELKPLFMDKEKINKLKSMRKTQDSACIIFPPKIFRLLEKPLHEFYGHRGEVLDLSWSKNNYLLSSSVDKTVRLWQVKSDNCLKVFPHSNYVTCVQFNPVDDNYFISGSIDGKVRIWTIPDCRVIDWTDIRDIVTAVCYRPDGQGGIIGSMAGNCRFYNVSDNQLQLDSQLCLLAKKKFTGRGITGFQFFPQDCNKVMVTCADSQVRILDGLNVIGKYKSLGTGSPLSASFTSDGKHILSASEDSNVYMWNVSQDESIPMKAKKIWSSERFFSNASIAVPWQGLKPQTMENEHQWNVLDKTSPESVHLNPPASFSLGQEYFLEALPKGSATWPEEKLPISSSKAKTSTMLKSEYRFLKSSCRSTSRSHAWGMVIVTAGWDGRIKTFHNYGLPVPV* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0428 494 Gene3D - 276 486 IPR015943 GO:0005515
Amo08g0428 494 Pfam WD domain, G-beta repeat 40 71 IPR001680 GO:0005515
Amo08g0428 494 Pfam WD domain, G-beta repeat 139 174 IPR001680 GO:0005515
Amo08g0428 494 Pfam WD domain, G-beta repeat 180 216 IPR001680 GO:0005515
Amo08g0428 494 PRINTS G protein beta WD-40 repeat signature 59 73 IPR020472 -
Amo08g0428 494 PRINTS G protein beta WD-40 repeat signature 162 176 IPR020472 -
Amo08g0428 494 PRINTS G protein beta WD-40 repeat signature 204 218 IPR020472 -
Amo08g0428 494 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 178 - -
Amo08g0428 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 218 IPR001680 GO:0005515
Amo08g0428 494 PANTHER WD REPEAT DOMAIN 44 12 494 IPR040324 -
Amo08g0428 494 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 40 73 - -
Amo08g0428 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 184 IPR001680 GO:0005515
Amo08g0428 494 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 12 494 - -
Amo08g0428 494 SMART WD40_4 269 309 IPR001680 GO:0005515
Amo08g0428 494 SMART WD40_4 446 486 IPR001680 GO:0005515
Amo08g0428 494 SMART WD40_4 33 72 IPR001680 GO:0005515
Amo08g0428 494 SMART WD40_4 178 217 IPR001680 GO:0005515
Amo08g0428 494 SMART WD40_4 137 175 IPR001680 GO:0005515
Amo08g0428 494 SMART WD40_4 219 258 IPR001680 GO:0005515
Amo08g0428 494 SMART WD40_4 310 350 IPR001680 GO:0005515
Amo08g0428 494 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 184 218 - -
Amo08g0428 494 ProSitePatterns Trp-Asp (WD) repeats signature. 337 351 IPR019775 -
Amo08g0428 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 40 81 IPR001680 GO:0005515
Amo08g0428 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 327 359 IPR001680 GO:0005515
Amo08g0428 494 SUPERFAMILY WD40 repeat-like 35 484 IPR036322 GO:0005515
Amo08g0428 494 Gene3D - 21 275 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0428 Amo-Chr8 8310019 8313918 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0428 136 347 U-box Gene Family AT2G33340 25.991 1.52e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0428 - - gmx:100817209 836.639