Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0420 ATGAGTGATGCAATAGCGGCTGAATTACTTTCCCAGGTGGTCTTAAATATATTTGATACTGTCAAATTAACGAACGAGGTTGTGATTCAGAAGGAAAATTTCAACAAGTTCTCGAATCAGTTGGAGAAGATCTCTTCTATTTTGAAGTCTTTACCAATAGAGGATATAGAGAATCCTGAGAGCTTGAAAGATGCCTTGGATGTTCTCAACCAAGCTATTACGGTTGCTAAGCAGCTGGTTTTTGAGGGGCACGGTAGAAGTAAGATTTATGTTTTGATGAATTCGAGAAGGATGGTTGCACGTTTGAAATGCTGCGGAGAAGAAATAAGGCGAGCCCTGAGGCTGATTCCTCTTGCAAGCAAAGATATAAGCGAGATGTTAGATGTGGAGTATGAAGATGAAGACGAACAAGTTTTGGAAAAAGTTGAGGGTGCGATACAAGAGAGGAATTTGGATGGAACGTATGCGAATGAGTTGTTGTGTTGTATTGCAGATGCCATGGGTGTCCCGAAGGAGAGTGATGCGTTGAAGAGAGAATTCCAAGAGTTGAAACGCGAAATGGAAAGTGCACGGTCCAGGAAAGATGTGGCAGAAGCTCTTCGCATGGAGAAGCTTATTGCAGTGCTTGAAAGGGCTGATTTGATAACCTCAGTGCAAGAGAAAGAAATTAGGTACTTTGAAAAGCGAAATTCTTTAGGCAGGACCCCTTTAGAGCCTCTGCATTCATTTTACTGTCCAATCTCTGGAGATATTATGCTGGACCCTGTTGAAACTTCTTCTCGCAAGACATTCGAGAGAAGTGCAATACAAAGGTGGTTCTCCCAAGGGAACACTCTCTGTCCATTGACCATGTTGCCCCTCGACACTCGAATCTTAAGGCCCAATAAGACTCTTCGCCACTCTATTCAAGAGTGGAAGGACAGGAATACAATCATCACCATTTCTACCATCAAGTCCCTGCTTGAAACAAATGAACAAGAGCAAGTGCTTGAATCCTTAGACAAGCTGCAGGATCTATGCTTAGAGAGACAGATACACCTAGAGTGGTTGAAAATGGAGAATTTCATAGCTCTTCTTATTGGACTTCTTGGTTCTAGAAACCGTGAAATAAGGAAGCGTGTTCTGCTCATACTGTCTTTGCTTGCAAAGGATGACACAGACAACAAGCAAGGCATTGCAAAAGTGGATGGTGCACTTCGATCGATTGTTCACTCACTTGCGCGTCAAATTGAGGAAAGCAAACTAGCATTGAAGTTGCTTTTGGAGTTATCCAAAACTAACATCTTGCTTCAACTCATAGGAAACGTTCAAGGAGGCATACTTCTAATAGTGACAATGTTAAATAGTGATGACGTTGAAGCAGCCAAAATTGCACATGAGCTTCTGGAGAACCTGTCTTTCCTTGACCAAAATGTTATAGAGATGGCAAAGGCAAATTATCTTAAGCCTTTGCTACTGAACCTTTCCACAGGAGCAAAGAATGTGAAAATACTCATGGCCGAAACCGTGTCCGAAATTGAATTGACTGAGCAGAATAAATTGTCCTTAGTTAAAGATGGGGCAGTGAGACCTCTTCTTGGACTGCTCTTGGAAAATGATGTGGAAATCAAGAAAGTGGTTGTAAAGTGTTTACTTAAGCTGTCAAGCTTGCTGGAGAATGGCATGCTGATGATTAAGCAAGGTGTTACTCGACCGCTATTAGAGTTGCTATACTCTCACAGTTTACAGTCACCTGCTCTGCAGGAACTGATCGTTGCAACAATAATGCATCTTGCCATATCAACCACCCACCAACAAGCTGAAGAGGAACGTGTATTGTTGCTTGATTCGGAGGAACAAGTATATAAATTCTTCTCTCTGGTTTCTTTGACAGAACTTGATGTACAAAACATGATTCTCAAAGCCTTTCAGGCACTATGCCAGTCTCTCTCCGGCTTCACCATCAGAATGTGGTTGAGACAGATCTCGGCTGCTAAAGTATTGGTCCACTTGGTAGAGCTTAACACCCACGCAGTTCGGGTGAATGCCTTGAAGCTTTGTTATTGCTTGACAGAAGATGGTGACCACAGGAATATCTCATCACACATAACTGAAAGGTTCATTAAGGTTTTGATGAACATCATCCAAGCTTCTGATGACGCTGAAGAGATGGTTGCTGCTATCGGCATCATCTCTAGACTACCACAGGAGACACACATAACCGAGTGGCTTCTGGATTCTGGGGCACTTCAAACTATTTCGGCATGCCTTAAAGATCAGCATAAACATGCCTCACACAGAAAGCAAGTGACAGAGAATTCTGTCGAAGCCCTTGGTCGATTTACTGTGTCGGCAAATCCGGAGTGGCAGAAGAGAGTAGCTGAAGCAGGCATGATCCCGGTGTTGGTGCAATTGCTGGCTTCTGGAACACCTCTTTCAAAACAGAAGGCAGCTATTTCGATGAAGCAGCTTTCTGAAAGCTCATACTGCTTGAGCAAGCCGATAAAGAAGGCGAGCGTTTTGAAACGGTGCTTCACAGCACAGGAAACAGGGTGCCCAGCACATTTAGGTACATGTACGATAGAGTCTTCATTCTGCATGTTACAAGGGAAGGCCTTGGAACCCCTTGTGCGGATGCTCTCGGAACAAGACGTTGGAACATGCGAAGCATCTTTAGATGCTCTAATGACTTTGCTTGACGGCCAAACACATTATAGTGGAAGTAAGGTGCTGGTGGATGCAAACGCTGTTGCACCAATGATAAAGCTCTTGAGTGTTCCAGCTTCAAGGTTGCAGGAAAAAACTCTAACAGCATTAGGCCAAATCTTTCAACTTGATGAAGTGAGAAATAAGTATAAGGCTATGGCCACAATGCCCTTGGTGGACATAACTCAGAGCAAAGACAGCCGTTTGAAAAGTCTTGCAGCTAAAGGCCTTGCTCAATTAGGTCTACTTGATAAACAATCTTCTTATTTTTAG 2958 0.432 MSDAIAAELLSQVVLNIFDTVKLTNEVVIQKENFNKFSNQLEKISSILKSLPIEDIENPESLKDALDVLNQAITVAKQLVFEGHGRSKIYVLMNSRRMVARLKCCGEEIRRALRLIPLASKDISEMLDVEYEDEDEQVLEKVEGAIQERNLDGTYANELLCCIADAMGVPKESDALKREFQELKREMESARSRKDVAEALRMEKLIAVLERADLITSVQEKEIRYFEKRNSLGRTPLEPLHSFYCPISGDIMLDPVETSSRKTFERSAIQRWFSQGNTLCPLTMLPLDTRILRPNKTLRHSIQEWKDRNTIITISTIKSLLETNEQEQVLESLDKLQDLCLERQIHLEWLKMENFIALLIGLLGSRNREIRKRVLLILSLLAKDDTDNKQGIAKVDGALRSIVHSLARQIEESKLALKLLLELSKTNILLQLIGNVQGGILLIVTMLNSDDVEAAKIAHELLENLSFLDQNVIEMAKANYLKPLLLNLSTGAKNVKILMAETVSEIELTEQNKLSLVKDGAVRPLLGLLLENDVEIKKVVVKCLLKLSSLLENGMLMIKQGVTRPLLELLYSHSLQSPALQELIVATIMHLAISTTHQQAEEERVLLLDSEEQVYKFFSLVSLTELDVQNMILKAFQALCQSLSGFTIRMWLRQISAAKVLVHLVELNTHAVRVNALKLCYCLTEDGDHRNISSHITERFIKVLMNIIQASDDAEEMVAAIGIISRLPQETHITEWLLDSGALQTISACLKDQHKHASHRKQVTENSVEALGRFTVSANPEWQKRVAEAGMIPVLVQLLASGTPLSKQKAAISMKQLSESSYCLSKPIKKASVLKRCFTAQETGCPAHLGTCTIESSFCMLQGKALEPLVRMLSEQDVGTCEASLDALMTLLDGQTHYSGSKVLVDANAVAPMIKLLSVPASRLQEKTLTALGQIFQLDEVRNKYKAMATMPLVDITQSKDSRLKSLAAKGLAQLGLLDKQSSYF* 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0420 985 Coils Coil 173 200 - -
Amo08g0420 985 SMART Ubox_2 242 305 IPR003613 GO:0004842|GO:0016567
Amo08g0420 985 ProSiteProfiles U-box domain profile. 238 312 IPR003613 GO:0004842|GO:0016567
Amo08g0420 985 Gene3D - 614 847 IPR011989 -
Amo08g0420 985 Gene3D - 848 983 IPR011989 -
Amo08g0420 985 SUPERFAMILY ARM repeat 510 894 IPR016024 -
Amo08g0420 985 Gene3D - 506 613 IPR011989 -
Amo08g0420 985 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 315 IPR013083 -
Amo08g0420 985 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 44-LIKE 6 985 - -
Amo08g0420 985 Pfam U-box domain 243 309 IPR003613 GO:0004842|GO:0016567
Amo08g0420 985 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 985 - -
Amo08g0420 985 SUPERFAMILY RING/U-box 228 311 - -
Amo08g0420 985 Gene3D - 316 505 IPR011989 -
Amo08g0420 985 SMART arm_5 779 819 IPR000225 GO:0005515
Amo08g0420 985 SMART arm_5 897 937 IPR000225 GO:0005515
Amo08g0420 985 SMART arm_5 426 467 IPR000225 GO:0005515
Amo08g0420 985 SMART arm_5 550 593 IPR000225 GO:0005515
Amo08g0420 985 SMART arm_5 509 549 IPR000225 GO:0005515
Amo08g0420 985 SMART arm_5 730 776 IPR000225 GO:0005515
Amo08g0420 985 CDD RING-Ubox_PUB 243 284 IPR045210 -
Amo08g0420 985 SUPERFAMILY ARM repeat 858 979 IPR016024 -
Amo08g0420 985 SUPERFAMILY ARM repeat 313 502 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0420 Amo-Chr8 8158734 8161921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0420 242 985 U-box Gene Family AT1G76390 26.092 2.86e-50 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0420 - - adu:107460521 1819.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0420 08 8158734 8161921 Amo17g2454 17 121774305 121775306 hybridization