Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0402 ATGGGAGGTTCATCAGATACGAAGTTCCTGCAAGACTTGCTATTGTACGCGGCCAGCGCTGCTATGAGTTGCCTGGTTCTCTTCGTTGGATTACGACAACTTGACCCAACCCGGGAGGCTTCCAAAAAGGTCCTCGAACACAAGAAAGAGATTGCCAAGCGTCTTGGTCGACCCCTTGTCCAGACCAACCCTTACGAGGATGTTATAGCAGGTGACGTTATAAATCCTGATCACATCGATGTGGAGTTTGACTCTATTGGGGGATTGGAAACAATCAAGCAAGCTCTGTTTGAGCTTGTTATACTGCCTCTGAAAAGACCGGACTTGTTTTCTTATGGTAAGCTTCTTGGACCTCAAAAGGGCGTCCTGTTGTATGGTCCTCCAGGAACTGGGAAAACCATGCTTGCGAAAGCAATTGCTAAGGAGTCAGGAGCTGTTTTTATTAATGTGAGGATATCAAACCTGATGAGCAAGTGGTTTGGTGATGCCCAAAAGCTGTTTTTTGGTCAACGTCGTACATCGGATCATGAGGCTTTATTAAACATGAAAACTGAGTTTATGGCTCTATGGGATGGATTTACCACAGATCATAAGTGTCGAGTTATGGTCCTTGCAGCTACCAATCGTCCTTCTGAACTTGATGAAGCAATACTTCGACGCCTTCCTCAAGCTTTTGAAATTGGAATTCCAGACCAGAGGGAGAGAGCTGCAATATTGAAGGTTATCTTAAGGGAGAGAGGCTTATGTGACGGTTATACTGGGTCAGATCTGTTTGACCTTTGCAAGAAGGCTGCCTATCTTCCTATTCGAGAACTACTGGATGAAGAGAAGAAGGGAAAACGTTCTTCCAAAAGGAAAAAAAATGACACTGAAAAAAGTACGAAAAATACGGTGATTTTACCCAAAATAAATAACATATCCTCTTCAAGAAGGATACTATAA 942 0.4342 MGGSSDTKFLQDLLLYAASAAMSCLVLFVGLRQLDPTREASKKVLEHKKEIAKRLGRPLVQTNPYEDVIAGDVINPDHIDVEFDSIGGLETIKQALFELVILPLKRPDLFSYGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLFFGQRRTSDHEALLNMKTEFMALWDGFTTDHKCRVMVLAATNRPSELDEAILRRLPQAFEIGIPDQRERAAILKVILRERGLCDGYTGSDLFDLCKKAAYLPIRELLDEEKKGKRSSKRKKNDTEKSTKNTVILPKINNISSSRRIL* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0402 313 ProSitePatterns AAA-protein family signature. 201 220 IPR003960 GO:0005524|GO:0016887
Amo08g0402 313 Gene3D - 80 166 IPR027417 -
Amo08g0402 313 Gene3D - 230 295 - -
Amo08g0402 313 MobiDBLite consensus disorder prediction 277 293 - -
Amo08g0402 313 Pfam ATPase family associated with various cellular activities (AAA) 122 165 IPR003959 GO:0005524|GO:0016887
Amo08g0402 313 Pfam ATPase family associated with various cellular activities (AAA) 170 228 IPR003959 GO:0005524|GO:0016887
Amo08g0402 313 MobiDBLite consensus disorder prediction 277 297 - -
Amo08g0402 313 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 167 285 - -
Amo08g0402 313 SMART AAA_5 118 231 IPR003593 -
Amo08g0402 313 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE 3 166 - -
Amo08g0402 313 Gene3D - 170 229 IPR027417 -
Amo08g0402 313 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE 167 285 - -
Amo08g0402 313 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 3 166 - -
Amo08g0402 313 CDD AAA 116 228 - -
Amo08g0402 313 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 277 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0402 Amo-Chr8 7733875 7737065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0402 81 281 Calmodulin-binding Proteins AT3G56690 30.417 1.45e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0402 K22530 - gmx:100796908 479.174