Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0392 ATGGCACAAGTTCAGGTGAGCCCCAATGCGAACGGTGATTCCGCCGCCGCCGCTGCTTTTGTCCCGAACCAGTCAGTGATGACGTCACTGTACGTTGGAGATCTCGACCGCAACGTCAAGGATCCGCAGCTCTACGATCTCTTCAACCAGATCGGCCAGGTCGTCTCCGCTCGCGTCTGCAGGGACTTGGCCACCCAGCAATCCCTCGGTTACGGTTACGTCAATTTCAGTAACCCTCAAGACGCGGCAAGAGCATTGGATGTGTTGAATTTCACTCCGCTGAACAACAAACCGATTAGGATCATGTATTCTCATCGGGACCCTAGCTCCCGCACTAGCGGCGCTGCTAATATATTTATCAAGAATTTGGATAAGTCGATTGATCATAAGGCTCTGCATGATACTTTTTCCTCTTTTGGGACTATTCTTTCTTGCAAGATAGCCACAGATCCTTCTGGCCAGTCAAAAGGATTTGGCTTTGTGCAATTTGAGAAGGAAGAGTCTGCTCAAAATGCCATTGACAAGTTGAATGGAATGCTGATAAATGACAAACAGGTTTACGTGGGGCATTTTCAAAGAAAGCAGGATAGAGAGAGTGTCTTAAGCGCCAATATAAAATTTAGTAATGTGTATGTAAAGAACCTGTCAGAGTCCATGTCGGATGATAACTTGAAGAAAATTTTTGGGGAGTATGGGACAATTACTAGTGCTGTAGTGATGAGAGATTTAGACGGTAAATCGAAATGTTTTGGTTTTGTCAATTTTGAAAATGCTGATGATGCTGCTAAAGCTGTTGAGGCACTCAATGGAAAGAAATTTGATGATAAGGAGTGGTACGTTGGGAAAGCCCAGAAGAAATCCGAAAGGGAGCTTGCCCTGAAGGAGCGATTTGAGCAGAGTATGAAGGAAGCTGCTGACAAATATCAAGGTGCTAACTTGTATCTCAAGAACTTGGATGATAGCATCGATGATGTAAAGCTCAGGGAACTCTTCTCAGATTTTGGTACAATAACTTCATGCAAGGTTATGCGTGATCCACATGGAGTCAGTAGAGGGTCTGGGTTTGTTGCATTTTCATCTCCTGAGGAAGCTACTCGAGCTCTCGGAGAAATGAAAGGGAAATTGATTTCTGGCAAACCTCTCTATGTTGCCCTTGCACCGCAGAAAAGAAGAAAGAAGAGCCAAGTTGCAGGCCCAGTTTTCTCAAATGACGCACGTATCAATGGCTCCTTCTGTTGCACCTCATCTCCCGCTCTATCCTCCAAGGGCCATGGGTCTTGGACATCCATTTTTGTATGGGCAAGCACCTCCAGCTGTCCTTCCTCAAGCTGGATTTGGTTATCAGCAGCAACTTGTGCCTGGAATGAGGCCAGGGGCTCCAATGCCAAGTTTTTTTGTTCCAGTGGTTCAGCAGGGTCAACAAGGGCAGCGCCCAGGTGTCCGTCGAGGAACAGGTCCTGTGCAACAACCACAGCAGCCAGTGCCGATGATGCAGCAGCAGATGCTTCCAAGGGGACGTGGCCATCGTTATCCAGGTGGTCGCAACATGCAGGAGGTTCCAATGCTTGCAGTCAACTATGA 1581 0.4719 MAQVQVSPNANGDSAAAAAFVPNQSVMTSLYVGDLDRNVKDPQLYDLFNQIGQVVSARVCRDLATQQSLGYGYVNFSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSSRTSGAANIFIKNLDKSIDHKALHDTFSSFGTILSCKIATDPSGQSKGFGFVQFEKEESAQNAIDKLNGMLINDKQVYVGHFQRKQDRESVLSANIKFSNVYVKNLSESMSDDNLKKIFGEYGTITSAVVMRDLDGKSKCFGFVNFENADDAAKAVEALNGKKFDDKEWYVGKAQKKSERELALKERFEQSMKEAADKYQGANLYLKNLDDSIDDVKLRELFSDFGTITSCKVMRDPHGVSRGSGFVAFSSPEEATRALGEMKGKLISGKPLYVALAPQKRRKKSQVAGPVFSNDARINGSFCCTSSPALSSKGHGSWTSIFVWASTSSCPSSSWIWLSAATCAWNEARGSNAKFFCSSGSAGSTRAAPRCPSRNRSCATTTAASADDAAADASKGTWPSLSRWSQHAGGSNACSQL* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0392 526 MobiDBLite consensus disorder prediction 507 526 - -
Amo08g0392 526 PANTHER POLYADENYLATE-BINDING PROTEIN 17 395 - -
Amo08g0392 526 PANTHER RNA BINDING PROTEIN 17 395 - -
Amo08g0392 526 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Amo08g0392 526 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Amo08g0392 526 Gene3D - 117 205 IPR012677 -
Amo08g0392 526 Gene3D - 12 116 IPR012677 -
Amo08g0392 526 CDD RRM3_I_PABPs 207 286 - -
Amo08g0392 526 SUPERFAMILY RNA-binding domain, RBD 208 390 IPR035979 GO:0003676
Amo08g0392 526 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 100 IPR000504 GO:0003723
Amo08g0392 526 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 186 IPR000504 GO:0003723
Amo08g0392 526 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Amo08g0392 526 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Amo08g0392 526 CDD RRM2_I_PABPs 114 190 IPR045305 -
Amo08g0392 526 CDD RRM4_I_PABPs 310 386 - -
Amo08g0392 526 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Amo08g0392 526 SMART rrm1_1 117 189 IPR000504 GO:0003723
Amo08g0392 526 SMART rrm1_1 29 102 IPR000504 GO:0003723
Amo08g0392 526 SMART rrm1_1 312 384 IPR000504 GO:0003723
Amo08g0392 526 SMART rrm1_1 209 281 IPR000504 GO:0003723
Amo08g0392 526 Gene3D - 206 291 IPR012677 -
Amo08g0392 526 Gene3D - 292 398 IPR012677 -
Amo08g0392 526 SMART rrm2_1 209 281 IPR003954 GO:0003676
Amo08g0392 526 SMART rrm2_1 312 384 IPR003954 GO:0003676
Amo08g0392 526 SMART rrm2_1 117 189 IPR003954 GO:0003676
Amo08g0392 526 MobiDBLite consensus disorder prediction 506 526 - -
Amo08g0392 526 CDD RRM1_I_PABPs 29 108 - -
Amo08g0392 526 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 29 396 IPR006515 GO:0003723
Amo08g0392 526 SUPERFAMILY RNA-binding domain, RBD 28 197 IPR035979 GO:0003676
Amo08g0392 526 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 193 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0392 Amo-Chr8 7541887 7545240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0392 1 396 Eukaryotic Initiation Factors Gene Family AT4G34110 67.407 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0392 K13126 - csin:114281995 622.083