Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0382 ATGGACAACACCATTGACCAGTTGAAATCATCTTCCTCTTCGGAAGAGGATCAGATGGACTTGATGAACATGATGATGATGCAACTTCCTAACGAATTCTCTTCACCTAATTACGCTGATGAGACCAGCGTCCAAGGATTCCACCCATCACCACAGCTTCTTGGTGCACGCAGTAGCAGTACTATGCAACTATCAGATTCAATTGATAACAGAAATTCTATCATGCCCTGGTCTTCACCATCCACCACAATCTCTTTCTCTAACAACAACACTACCTCAATGCTTCAAACAGAATTTCCATCTTTGTTGGGAAATTCAGGTGCAACGGAGAATAAGCGGAACTCGATGGCGGCGATGAGGGAGATGATATTCAGAATAGCGGCCATGCAGCCAATACACATAGACCCTGAGTCAGTAAAGCCACCAAAGCGGAGGAACGTGAAGATCTCGAAGGATCCACAGAGTGTGGCGGCGCGGCACAGGAGAGAAAGGATAAGTGAGAGAATAAGGATACTGCAGAGACTGGTCCCCGGAGGAACCAAGATGGACACTGCTTCAATGCTTGATGAGGCCATTCACTACGTCAAATTTCTCAAGGCTCAGATTCACTCATTGGAACGTGCTTCTTCTTCTGCAAGCAATAATAATAATAATAATGCAACTGCATCAGGTGCAGGTGCAGCTACTGCCATTGCCAATGCCCCTGGCGCCTCTTATCTTTCTCTACCTAAACCTTATCAAGGTCGAAATGCTCACCATTACGGAGATGCATGA 774 0.4599 MDNTIDQLKSSSSSEEDQMDLMNMMMMQLPNEFSSPNYADETSVQGFHPSPQLLGARSSSTMQLSDSIDNRNSIMPWSSPSTTISFSNNNTTSMLQTEFPSLLGNSGATENKRNSMAAMREMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKAQIHSLERASSSASNNNNNNATASGAGAATAIANAPGASYLSLPKPYQGRNAHHYGDA* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0382 257 Gene3D - 148 222 IPR036638 GO:0046983
Amo08g0382 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 208 IPR036638 GO:0046983
Amo08g0382 257 SMART finulus 155 204 IPR011598 GO:0046983
Amo08g0382 257 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 5 247 - -
Amo08g0382 257 Coils Coil 195 215 - -
Amo08g0382 257 Pfam Helix-loop-helix DNA-binding domain 158 198 IPR011598 GO:0046983
Amo08g0382 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
Amo08g0382 257 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 5 247 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0382 Amo-Chr8 7420218 7420991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0382 75 227 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 63.399 4.92e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo08g0382 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0382 - - aip:107607656 400.979