Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0379 ATGAACTTCAAGAATTTCGGCAACGATCCTGGCCCTGCTGCCGGAGGAAGCGGAGATGCTGGTGGGAGACCGCCGGGGAATTTTCCCCTGACACGGCAACCTTCCGTGTACAATCTGACGTTCGATGAGTTCATGAACACCATGGGAGGTTCAGGAAAGGACTTCGGCTCCATGAACATGGATGAACTTCTTAAAAACATATGGACCGCCGAAGAGGTTCAAACTATGGCGTCTGCCACGGGTGTCGGTGGAGAACCGGGCTCCGCAGGCTTCGGCGGTGCCGGCATCAACAATTTGCAGAGGCAGGGATCCTTGACGCTCCCACGAACCCTGAGTCAGAAGACAGTGGACGAGGTCTGGAAAGACATTTCGAAGGAGTACGGCGGAGGGTCGACCGGTGGCGGCGTCGGCGGGCCGAATCCCGCGCAGACGACGCAGCGGCAGCCGACGTTGAAAGAGATCACGCTGGAGGAGTTCTTGGTGAGAGCAGGTGTTGTTAGAGAAGACGCGCAATTGGCAGCTGCTGGGAAAGCAAACGACAGCGTTTTTGTTGATTTGTCTCGTGGTGGAGGGAATAGTGGCGGTTTAGGAGTAGGGTTTCAGCAATTGAACAAGGTACCGGGGTTGATGGGTGATAGTGTTGGTGTGAACAACAATGATCCTCTGGTTGGTCTTCAGCCAAGAACAAATTTGCCTGTGAATGTTAATGGGGTTAGGTCTTCCAATCAGCAGATGCAGATGCAGAATTCACAGTCCCCTCATCAGCATCAGCCTCAGATATTCCCCAAACAAGCTCCTATGAGCTATGCTATGCCTCTTGTGCAAGGTGGAGGAGGAGGGATGGGGATGGTTGGTTTGTCACCTGGGCCTGTTCATGTTGCTACTGGCTCGCCGGCTAGCCAGATTTCCAATGATAAGATGGCAAAGAGCAATGGAGATACTTCTTCGGTTTCTCCCGTGCCTTATGTATTTAACGGTGGCCTCAGGGGCCGGAAGAGCGGTGGAGCAGTTGAGAAGGTCATTGAGAGGAGGCAGAGGAGAATGATCAAGAACAGAGAGTCGGCAGCTAGGTCCCGCGCTCGAAAGCAGGCTTATACCATGGAATTAGAAGCAGAAGTTCAAAAGTTGAAAGAGGAGAACCAAGAACTTCAGAAAAAGCAGGAAGAAATCATGGAAATTCAGAAAAATCAAGTTATGGAAATGATGAATTTGCAACAAAACGGCAAGAGAAGATGCTTAAGACGAACACAAACTGGTCCATGGTAG 1266 0.5142 MNFKNFGNDPGPAAGGSGDAGGRPPGNFPLTRQPSVYNLTFDEFMNTMGGSGKDFGSMNMDELLKNIWTAEEVQTMASATGVGGEPGSAGFGGAGINNLQRQGSLTLPRTLSQKTVDEVWKDISKEYGGGSTGGGVGGPNPAQTTQRQPTLKEITLEEFLVRAGVVREDAQLAAAGKANDSVFVDLSRGGGNSGGLGVGFQQLNKVPGLMGDSVGVNNNDPLVGLQPRTNLPVNVNGVRSSNQQMQMQNSQSPHQHQPQIFPKQAPMSYAMPLVQGGGGGMGMVGLSPGPVHVATGSPASQISNDKMAKSNGDTSSVSPVPYVFNGGLRGRKSGGAVEKVIERRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEENQELQKKQEEIMEIQKNQVMEMMNLQQNGKRRCLRRTQTGPW* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0379 421 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 8 421 IPR043452 GO:0003700|GO:0045893
Amo08g0379 421 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 341 392 IPR004827 GO:0003700|GO:0006355
Amo08g0379 421 CDD bZIP_plant_BZIP46 343 397 - -
Amo08g0379 421 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 346 361 IPR004827 GO:0003700|GO:0006355
Amo08g0379 421 SUPERFAMILY Leucine zipper domain 343 392 IPR046347 GO:0003700|GO:0006355
Amo08g0379 421 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 8 421 - -
Amo08g0379 421 Pfam bZIP transcription factor 343 394 IPR004827 GO:0003700|GO:0006355
Amo08g0379 421 Coils Coil 359 396 - -
Amo08g0379 421 Gene3D - 341 397 - -
Amo08g0379 421 MobiDBLite consensus disorder prediction 1 33 - -
Amo08g0379 421 SMART brlzneu 339 404 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0379 Amo-Chr8 7391937 7396593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0379 1 421 bZIP Transcription Factor Family AT4G34000 45.041 1.18e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo08g0379 bZIP_1 1.9e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0379 K14432 - gmx:100101876 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0379 08 7391937 7396593 Amo17g2428 17 121042425 121048022 hybridization