Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0377 ATGCATGTCTTGGAATGTTTCCTCTTATTGTTGTCTCTCTTCATCCTCTCACCTTCTGATGCTTTTTCCAGCGATGAAGCTTCTTTCATTGCACGTCGCCAATTGTTAACCCTTGAGGAGAACGCTGATTTACCCGACGATTGGGTGGATAATTACCAAATTAACCTAACCTTCGATAATCCTAGACTCAAGAGTGCCTACATTGCCCTTGAAGCATGGAAGCATGCTATCTATTCTGACCCATCAAACTTCACATCTAATTGGGTGGGCCCTGATGTTTGCTCTTACAATGGAGTTTATTGTGCTCCAGCGCTTGATGACCCTTCGATTCAAGTTGTGGCTGGCATTGATCTTAACCATGCAGATATTGCAGGCTACATCCCTTCAGAGATTGGGTTGTTAACTGATCTTGCACTTTTGCACATAAACTCTAACAGGTTTTGTGGCATTCTCCCAAAAAGCTTCTCCAAGTTAAAGCTCTTGTATGAGATTGATATCAGCAACAACCGTTTTGTGGGTCCATTTCCAAACCCTGTTCTCTCCATATCTTCTCTTCATTACCTTGATCTTAGGTTTAATGACTTCGAAGGCGAGGTTCCATCGGAGCTTTTCAATATTACATTAGATGCAATCTTCTTGAACAACAATAGGTTCACATCTGCGATTCCGGAGAGCATTGGAAGCTCTCTGGCCTCTGTGATTGTATTGGCCAACAACCACTTTCAGGGATGCATTCCTGCAAGTATTGGTTCGATGGACAATACATTGAATGAGTTTGTTGTGACGAACAACAAGCTTACGGGGTGCTTGCCCCCGGAGATTGGAAAGCTTAGCCACATGGAGGTGTTTGACATTAGTAAGAACAACTTGGTTGGTGTGTTGCCAAGGACATTGATGGGATTGAAGGAAGTGACAGTGTTGTCGATTGCAGACAACAAGCTTACCGGTTTTGTGCCAAAAAGCATATGTGAGTTGGAGAACTTGAAGAACTTTACGTTCTCGAACAACTATTTCAACGGTGAGGAAGAGGGTTGTAACCCTAAAACAAGAAAGGGGATCAAGTTGGATGATCAAAAGAATTGCATACCAGAAAGGCCAAAACAGAGGGATGGAAGCGCTTGTAATGCTGTCATAAGCAAGCCTGTTGATTGTAGCAAGGCACAGTGTGAGAAACCAATGCCAATAACACCATCACCAAATAATCCTTCTAAACCTTCAAAAGAGAAACCAACTCCAACGCCCTCCTCACATAATAACAAGAAACCACAACCTACACCTTCTCCAAATGAAAAGAAAACACCGTCGTCGCCAAAGCCAACTCCTTCTCCAACTAAGAAGCCAACATCAACACCACAGACTTCAACACCGTCAAATCCAAAACCACCTAAAGCACCTAAGCATGATGATGATTATGATGATCATTATGAAGAACCTAAAGAACGAAATAGGCCTCCAAAATCTCCACCTCCATCTCCAGCTCCAGTAGTACATTTTCCTCCTCCTCCACCAGTCTACTCTCCACCACCTCCACCAATCCATTCTCCACCACCACCTCCAATTCACTCCCCACCACCACCCATCAACTCTCCACCACCACCTATCTACTCTCCTCCTCCACCAGTTCTCTCCTCGCCACCGCCTATCTACTCTCCTCCACTAGTAGTGCAATCCCCACCACCACCCATTTATTCTCCTCCTCCACCGGTTTTATCCCCACCACTCCCACCACCAATCTACTCTCCTCCACCACCTGTTAACTTTCCTCCTCCACCGGTATATTCTCCCCCACCACCAATCTACTCTCCTCCACCACCCACCTACTCTCCTCCTCCTCCTGTTGTTTATGCACCACCACCCCAAGAAGATGATATCGTTATTCCACATGACTTTGGTTCTTCATATGCTTCTCCTCCGCCACCAATTATCTCTGGCTACTAA 1938 0.4515 MHVLECFLLLLSLFILSPSDAFSSDEASFIARRQLLTLEENADLPDDWVDNYQINLTFDNPRLKSAYIALEAWKHAIYSDPSNFTSNWVGPDVCSYNGVYCAPALDDPSIQVVAGIDLNHADIAGYIPSEIGLLTDLALLHINSNRFCGILPKSFSKLKLLYEIDISNNRFVGPFPNPVLSISSLHYLDLRFNDFEGEVPSELFNITLDAIFLNNNRFTSAIPESIGSSLASVIVLANNHFQGCIPASIGSMDNTLNEFVVTNNKLTGCLPPEIGKLSHMEVFDISKNNLVGVLPRTLMGLKEVTVLSIADNKLTGFVPKSICELENLKNFTFSNNYFNGEEEGCNPKTRKGIKLDDQKNCIPERPKQRDGSACNAVISKPVDCSKAQCEKPMPITPSPNNPSKPSKEKPTPTPSSHNNKKPQPTPSPNEKKTPSSPKPTPSPTKKPTSTPQTSTPSNPKPPKAPKHDDDYDDHYEEPKERNRPPKSPPPSPAPVVHFPPPPPVYSPPPPPIHSPPPPPIHSPPPPINSPPPPIYSPPPPVLSSPPPIYSPPLVVQSPPPPIYSPPPPVLSPPLPPPIYSPPPPVNFPPPPVYSPPPPIYSPPPPTYSPPPPVVYAPPPQEDDIVIPHDFGSSYASPPPPIISGY* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0377 645 Pfam Leucine rich repeat 279 337 IPR001611 GO:0005515
Amo08g0377 645 MobiDBLite consensus disorder prediction 395 409 - -
Amo08g0377 645 MobiDBLite consensus disorder prediction 388 566 - -
Amo08g0377 645 Gene3D Ribonuclease Inhibitor 66 364 IPR032675 -
Amo08g0377 645 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 3 552 - -
Amo08g0377 645 MobiDBLite consensus disorder prediction 417 446 - -
Amo08g0377 645 MobiDBLite consensus disorder prediction 462 484 - -
Amo08g0377 645 PRINTS Proline rich extensin signature 390 402 - -
Amo08g0377 645 PRINTS Proline rich extensin signature 405 426 - -
Amo08g0377 645 PRINTS Proline rich extensin signature 428 444 - -
Amo08g0377 645 PRINTS Proline rich extensin signature 448 465 - -
Amo08g0377 645 PRINTS Proline rich extensin signature 474 499 - -
Amo08g0377 645 SUPERFAMILY L domain-like 68 342 - -
Amo08g0377 645 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 3 552 - -
Amo08g0377 645 MobiDBLite consensus disorder prediction 485 566 - -
Amo08g0377 645 MobiDBLite consensus disorder prediction 611 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0377 Amo-Chr8 7316594 7318531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0377 21 453 Trihelix Transcription Factor Family AT4G33970 57.241 1.98e-165 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0377 - - ahf:112705802 845.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0377 08 7316594 7318531 Amo17g2366 17 119311785 119313788 hybridization