Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0328 ATGGAAACTGGGGATGACAATAGCAATGCCGATAGCCCTGAACGTACGGCAGGGATGGAGGGGTGCTTGTATTCCGAAGCTGTAAATAATGGAATGGTAATTGTTGATGGGAGTGGTCCTGATGAGAGCAAAGAAATTAGGCATTCGAAGAAGGAAGCTGTAAATACCAGAGTGTCAACTGCAGATGGGCGTTTTCGGACATACAAGAGGCGGAAACATGTAAAGATGAGTTGTTCAGAAAGCAAAGCTCAGGAAGAAAGCAGAGTGTGTGTGGAAGCCGCAAGTCACTTTTCAGAACAGGCTGTGAAGAAACCATATGGTATAGCTGTAGGAAATACTTCAAAAGATAATTCAAATGGACATTGGGGGAATGTTGTACTAAATCATTTATATCATTCATTAGGCAATGATAACAGTGGCACAAAGTGGTGCATAAAGGAAGCACTGATGAGTAATCCAAAATCCATTACCGACATGGAAACTTCTAAAATTGACAAAGATGGTCAAGAATGCTCGTCACACTTCGACTGTTCCTCTCATAGGTTACAGTTTGAAGCTAATGGGCATGCATATGTCATGCATGGTGGATGTTCAAGTGAATCAGATGGCAATGGTCTTACTAAGAAGTGTCAGCGTGTGTTCCATAATATCTTAGCCTCTGAAAAATTCAGTTCATTATGTAAGGTGCTACTAGAAAATTTTCATGGAATGAAACCTGAAAGTGTATTTGACTTTAGTGTCATAAATTCAAGGATGACAGAAGAAGCTTATGAACAATCACCCACACTTTTCTTGTCAGATTTTCAACAGGTTTGGAGAAAGCTTGAAAACACTGGAAATGAGATTGTTGCTATAGCAAAGAGTCTTTCCAACTTGTCAAGAGCGTATTACTTAGAGCATGTGGGAGTTCCTGGACACAGTTCATTTGAGGATCAAAAACAAGTGTTCCATAACTATGCATTGGACAATGTTATGAGACCACAGCAGACAGAAGTTTGTGCTACAGATAAAGTCTGCAGTTGCAGGCATTGTGGAGGCAAGGCAGATGGGACAGACTCCTTGATTTGTGATTCATGTGAGGAGATGTACCATGTATCTTGTATCGTGCCGGCTTTGAAGGAATTACCTGAAAAAAGCTGGTTCTGTGCCAATTGTACTGCTATTGAAATAAGATCTCCACATGATAATTGTGTGGTGTGTGAAAGGTTGAATGCCCCAAAGTCCTTGAACAACATTGTTGGTGATGAGAGCATTCCTACAAATGATGAAACACACAATGAATTGGAGGAAAATTCAAATTGTACATATGGGATCGAGGTGTCCATAGGGAGAAGAAACTTGCCTGATTGCAAAATTTGTAGGGAGGAAGTAGATGGAGAAGATGTACGGATATGCGGTCACAATTCATGCCCTAGTAAATACTATCATGTAAGGTGTTTGTCCACTAAGCAGGTCCAGTCATATGCTCACTGTTGGTACTGCCCTTCTTGTTTATGTCGAGTTTGCCTCGTTGATCGAGATGATCACAAGATTGTTCTCTGTGATGGTTGCGACCATGGATACCACATCGATTGCATGGAGCCTAAACGGACTACCATTCCAAAAGGCAACTGGTTCTGCAGAAAATGCGATGCAGGGATCCAAGCAATACGCCGGGCTAAAAAGACATATGAGAATTTCAATTTTAGAACTGGCGAAGATGTTTCAAAGCCTAAGTATAAGCTTGGTAAGAAATGGAAACAAGGACGAGAATTGGAGAAAGATGGAGGAATGGACATGCTTTTAACAGCAGCCAACACACTTAAATTTGAAGAGAACTTGGCTAGTAGCTAG 1833 0.4113 METGDDNSNADSPERTAGMEGCLYSEAVNNGMVIVDGSGPDESKEIRHSKKEAVNTRVSTADGRFRTYKRRKHVKMSCSESKAQEESRVCVEAASHFSEQAVKKPYGIAVGNTSKDNSNGHWGNVVLNHLYHSLGNDNSGTKWCIKEALMSNPKSITDMETSKIDKDGQECSSHFDCSSHRLQFEANGHAYVMHGGCSSESDGNGLTKKCQRVFHNILASEKFSSLCKVLLENFHGMKPESVFDFSVINSRMTEEAYEQSPTLFLSDFQQVWRKLENTGNEIVAIAKSLSNLSRAYYLEHVGVPGHSSFEDQKQVFHNYALDNVMRPQQTEVCATDKVCSCRHCGGKADGTDSLICDSCEEMYHVSCIVPALKELPEKSWFCANCTAIEIRSPHDNCVVCERLNAPKSLNNIVGDESIPTNDETHNELEENSNCTYGIEVSIGRRNLPDCKICREEVDGEDVRICGHNSCPSKYYHVRCLSTKQVQSYAHCWYCPSCLCRVCLVDRDDHKIVLCDGCDHGYHIDCMEPKRTTIPKGNWFCRKCDAGIQAIRRAKKTYENFNFRTGEDVSKPKYKLGKKWKQGRELEKDGGMDMLLTAANTLKFEENLASS* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0328 610 SUPERFAMILY FYVE/PHD zinc finger 336 387 IPR011011 -
Amo08g0328 610 ProSiteProfiles Zinc finger PHD-type profile. 338 388 IPR019787 -
Amo08g0328 610 SMART PHD_3 340 386 IPR001965 -
Amo08g0328 610 SMART PHD_3 449 498 IPR001965 -
Amo08g0328 610 SMART PHD_3 499 544 IPR001965 -
Amo08g0328 610 ProSiteProfiles Zinc finger RING-type profile. 450 497 IPR001841 -
Amo08g0328 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 443 502 IPR013083 -
Amo08g0328 610 PANTHER HISTONE ACETYLTRANSFERASE 125 605 - -
Amo08g0328 610 ProSiteProfiles Zinc finger PHD-type profile. 496 546 IPR019787 -
Amo08g0328 610 SUPERFAMILY FYVE/PHD zinc finger 498 552 IPR011011 -
Amo08g0328 610 Pfam PHD-finger 499 544 IPR019787 -
Amo08g0328 610 Pfam PHD-finger 341 386 IPR019787 -
Amo08g0328 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 503 566 IPR013083 -
Amo08g0328 610 SUPERFAMILY FYVE/PHD zinc finger 437 498 IPR011011 -
Amo08g0328 610 Gene3D - 226 388 - -
Amo08g0328 610 PANTHER D4, ISOFORM A 125 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0328 Amo-Chr8 6276065 6286003 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0328 498 565 C2H2 Transcription Factor Family AT3G01460 39.706 1.19e-11 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo08g0328 PHD 6.1e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0328 - - lang:109337790 770.385