Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0315 ATGAAGCCCGCTACCACCAACATGGCTCAGCCGCAGAGTAATTGGGAGGCTGATAAAATGCTTGATGTTTACATCCATGATTATTTTGTAAAGAGAAAATTACATAACACTGCAAAAGCTTTTATGACAGAAGGCAAAGTTTCCACCGATCCTGTAGCAATTGACGCTCCTGGAGGATTTCTGTACGAGTGGTGGTCTGTCTTTTGGGATGTCTTCATCTCAAGGACAAACGAGAAACATTCTGAGGCTGCTGCAGCTTACATTGAGACCCAGCAAATGAAGGCTAGAGAACAACAACTTCAGATGCAACAATTGCAACTTATGCAGCAGCGCGGTGCACAGCTGCAACGCCGGGATCCTAATCATCCTCCTCTAGGTGGTTCCTTAAGTGCCATGAACTCTGAAGGAATGTTGGGGCAGCAACCAACAAATGTGTTGGCCATTAAAATGTATGAAGACCGAATGAAACACTCTCATTCAATGGAGTCAGAGGCATCTCCAACACTTATCGATGCAAATAGGATGGCCCTTCTTAAGTCTGGAACAAGTCATCAAGGTCAGTTGGTCCATGGTAATTCAGGAAATATGTCTACTGCATTGCAGCAACTTCAGGCCCGGACTCCTTTGACAACTGACATCAAAGGAGAAGTCAATTTAGGTGCCACTCCCAAGAGTTTGCCTATGGATAACTCCGTGTACAGACAAGCAATTTTACAATCAAAATCCGGGCTAGGCGGCACAGGGTTAAATCCAGGGGTTACAAGTCTTCCACTAAAGGGGTGGCCCTTAACTGGTATTGATCAACTAAGACCTGGCGGTTTGGGCGTACAAGTTCAGAAGCCTAATTTGACAACTCAAAGCCAATTTCTTTTGGCATCACAACAGCAGCAAGTCTTAGCACAGTCTCAGGCACAAAACAACCTTGGAAGTTCTAATAGTCAAGGTGATATGGATCCACATAGACTTTCTACGGTCCCTCGAGGTGGCTTAAGTGCAAAAGATGGTCAATCTACCAGCTCCCAAGTGCAGTCAGGTTCACCTAAGAACAACCGGAAAAGGAAACAACATTCTTCTTCTGGACCTGGCAATAGCACTGGTACTGGAAACACAGTAGGTCCTTCACCTAATTCACCACCATCAACTCACACACCTGGTGATGGAATAAATACAGCAAGCAGCATGCAGCATGTTAACAGTATGCCAAAGAGTATGATGATGTATGGTACAGAAGCAACAGGTGGCCTTGCATCGTCTTCTAATTTGCTTGAGGATATGGACCGATTTGGAGATGTTGGTACTTTAGAGGATAATGTGGAATCCTTTCTATCAAATGATGGAGGAGATGAAGGTAGTCTCTATGGAAGTATAAAACAAAATCCGGCTGAGCAACAAAAGGAATCATCAAAAGGTTTCACCTTTGCTGAATTTGGTTGCATACGAACAAGGAACAGCAAAGTTACTTGCTGTCATTTTTCATCTGATGGAAAATTACTTGCCAGTGCTGGACATGACAACAAGGTTGTCCTTTGGAACATGGACACTTTACAGACAGAGAGCACTCCAGAAGAACACAAGTTGGTTATTTCAGATGTCCGTTTTAGACCAAATTCATCTCAGTTGGCGACAGCCTCAATCGATAAATCTGTGCGGTTATGGGATGCAGCCAATCCAAGCTATTGTGTGCAAGAATACGGTGGGCACAGTGCAGCAATTATGTCTCTTGATTTCCACCCAAAGAAGACTGATATGTTCTGCTTTTGTGATAGTGAAAATGCAATTCGGTACTATGATATTACTTCATCCTCCTGCACGCATGTATTGAAGGGTGGAAATGCTCAAGTGCGGTTTCAGCCTAGAGTGGGGCAAGTACTAGCAGCAGCTTCTGACAAAGTAGTGTCAATTTTTGATGTTGAAACCGACAGACAAATTTATTCACTTCAGGGACACTCTGAAGCGGTGAACTATATTTGCTGGGATGCAACTGGAGATTTCTTGGCAACTGTGAGTCAAAATTTGGTGAAGATTTGGACACTGGCCTCTGGAGAATGCATTCAGGAGCTTAGCTCAAATGCAAACCAGTTCCATTCTTGTGTCTTTCATCCAAGCTATTCAACTTTGTTGGTGATTGGAGGGTTTTCGTCCTTGGAGCTGTGGAACATGGCTGAGAACAAAAGCATGACAATTTCTGCACACGAGAATATAATTTCCGCTTTGGCTCAATCTCCTGTAACTGGAATGGTCGCCTCTGCAAGTCATGACTGCTCTGTTAAGTTATGGAAATAA 2283 0.4376 MKPATTNMAQPQSNWEADKMLDVYIHDYFVKRKLHNTAKAFMTEGKVSTDPVAIDAPGGFLYEWWSVFWDVFISRTNEKHSEAAAAYIETQQMKAREQQLQMQQLQLMQQRGAQLQRRDPNHPPLGGSLSAMNSEGMLGQQPTNVLAIKMYEDRMKHSHSMESEASPTLIDANRMALLKSGTSHQGQLVHGNSGNMSTALQQLQARTPLTTDIKGEVNLGATPKSLPMDNSVYRQAILQSKSGLGGTGLNPGVTSLPLKGWPLTGIDQLRPGGLGVQVQKPNLTTQSQFLLASQQQQVLAQSQAQNNLGSSNSQGDMDPHRLSTVPRGGLSAKDGQSTSSQVQSGSPKNNRKRKQHSSSGPGNSTGTGNTVGPSPNSPPSTHTPGDGINTASSMQHVNSMPKSMMMYGTEATGGLASSSNLLEDMDRFGDVGTLEDNVESFLSNDGGDEGSLYGSIKQNPAEQQKESSKGFTFAEFGCIRTRNSKVTCCHFSSDGKLLASAGHDNKVVLWNMDTLQTESTPEEHKLVISDVRFRPNSSQLATASIDKSVRLWDAANPSYCVQEYGGHSAAIMSLDFHPKKTDMFCFCDSENAIRYYDITSSSCTHVLKGGNAQVRFQPRVGQVLAAASDKVVSIFDVETDRQIYSLQGHSEAVNYICWDATGDFLATVSQNLVKIWTLASGECIQELSSNANQFHSCVFHPSYSTLLVIGGFSSLELWNMAENKSMTISAHENIISALAQSPVTGMVASASHDCSVKLWK* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0315 760 Pfam WD domain, G-beta repeat 642 676 IPR001680 GO:0005515
Amo08g0315 760 Pfam WD domain, G-beta repeat 724 760 IPR001680 GO:0005515
Amo08g0315 760 Pfam WD domain, G-beta repeat 520 553 IPR001680 GO:0005515
Amo08g0315 760 Pfam WD domain, G-beta repeat 484 511 IPR001680 GO:0005515
Amo08g0315 760 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 479 514 - -
Amo08g0315 760 ProSitePatterns Trp-Asp (WD) repeats signature. 498 512 IPR019775 -
Amo08g0315 760 Coils Coil 88 108 - -
Amo08g0315 760 MobiDBLite consensus disorder prediction 301 319 - -
Amo08g0315 760 PRINTS G protein beta WD-40 repeat signature 747 760 IPR020472 -
Amo08g0315 760 PRINTS G protein beta WD-40 repeat signature 540 554 IPR020472 -
Amo08g0315 760 PRINTS G protein beta WD-40 repeat signature 498 512 IPR020472 -
Amo08g0315 760 SMART WD40_4 600 636 IPR001680 GO:0005515
Amo08g0315 760 SMART WD40_4 639 677 IPR001680 GO:0005515
Amo08g0315 760 SMART WD40_4 721 760 IPR001680 GO:0005515
Amo08g0315 760 SMART WD40_4 472 511 IPR001680 GO:0005515
Amo08g0315 760 SMART WD40_4 680 719 IPR001680 GO:0005515
Amo08g0315 760 SMART WD40_4 514 553 IPR001680 GO:0005515
Amo08g0315 760 SMART WD40_4 557 597 IPR001680 GO:0005515
Amo08g0315 760 SMART Lish 17 49 IPR006594 GO:0005515
Amo08g0315 760 ProSiteProfiles LIS1 homology (LisH) motif profile. 17 49 IPR006594 GO:0005515
Amo08g0315 760 CDD WD40 483 760 - -
Amo08g0315 760 ProSiteProfiles Trp-Asp (WD) repeats profile. 728 760 IPR001680 GO:0005515
Amo08g0315 760 MobiDBLite consensus disorder prediction 442 467 - -
Amo08g0315 760 MobiDBLite consensus disorder prediction 301 394 - -
Amo08g0315 760 Pfam LisH 19 45 IPR006594 GO:0005515
Amo08g0315 760 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 12 760 - -
Amo08g0315 760 SUPERFAMILY WD40 repeat-like 477 760 IPR036322 GO:0005515
Amo08g0315 760 Gene3D - 477 613 IPR015943 GO:0005515
Amo08g0315 760 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 12 760 IPR044716 GO:0003714
Amo08g0315 760 Gene3D - 614 760 IPR015943 GO:0005515
Amo08g0315 760 MobiDBLite consensus disorder prediction 330 348 - -
Amo08g0315 760 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 521 553 - -
Amo08g0315 760 ProSiteProfiles Trp-Asp (WD) repeats profile. 521 553 IPR001680 GO:0005515
Amo08g0315 760 MobiDBLite consensus disorder prediction 356 394 - -
Amo08g0315 760 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 728 760 - -
Amo08g0315 760 ProSiteProfiles Trp-Asp (WD) repeats profile. 479 520 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0315 Amo-Chr8 5850852 5859682 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0315 497 745 U-box Gene Family AT2G33340 28.682 3.20e-16 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Amo08g0315 WD40 0.0058 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0315 - - qsu:111995984 1144.41