Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0308 ATGGAAGAGCTAGCGTGTGAGCTGAGTGATCATGAAAAGAGAAACGCTCAAGGTTTGCCACCCGGTTTCAGGTTTCACCCAACTGATCAAGAACTCATTACCTTCTATTTGGCTTCCAAGGTCTTCAATACTACTACTACTACTCATGTCAACTTTGTGGAGGTTGATCTCAATCGATGCGAGCCATGGGAACTTCCAGAAGTGGCAAAGATGGGGGAGAGAGAGTGGTATCTGTACAGTGTGAGAGACAGAAAATACCCAACGGGCCTCAGAACTAACAGAGCAACCGCTGCTGGGTACTGGAAGGCTACCGGCAAGGACAAGCAAGTATACGGCGGCGGTGGCCTTGTTGGGATGAAGAAGACGTTGGTGTTCTACAAAGGGAGGGCCCCCCGCGGTCAGAAGACTAAATGGGTAATGCATGAGTTCCGGTTGGACCCTCACAGCTCTCCTTCCCTCTCTAAGGATGAGTGGGTAATATGCAGAATATTTCATAAAAGTGGGGAAAAGAGAACTCCTACTACTACTCCTGCTCCTCTGCTACTTCATCATCAACAACACGATCCATCATCACTGTTCAATGACCATATCTCCCACTCTCATAATCATAATCAAAACCTCCTCTCGCCATTGCTTCATCCTTTCCCAATCCCTGAAGAAACCACTAAAACCAGATCATCAACAATTAACAGCAACCATTACCCTCCACCACCACCTTCCTCCCAACACTCGCTTAAGCTCAACAAGTCTACTAAATTAACAAAAACAGTGCCTCCTTCTCCATCATTCTTCCAATACCAACAGCTTCTAGAAGATTATCCCAACTTATTGCATTGGATCGACAGTGGTAATAACAATAATAATAACTGCAACGCTAATAATACTGCTAGTAGTGTTGAGATAATGGATGCTGCTGCTGCTGGCTTGATAGCATTCTCATCAGGAGGACCTTCACCTACTCCTAATAATAATAATAATAATAATAATAACAATGCTGAAATAATGATGATGTCTTCTTCTTCGGCTTCTATGCTGCACATACTCGACGATGCTCCTCTTGGGATTCAATCTTGGCCTCATCATCATCATCATCACCTTCTGTAA 1104 0.4429 MEELACELSDHEKRNAQGLPPGFRFHPTDQELITFYLASKVFNTTTTTHVNFVEVDLNRCEPWELPEVAKMGEREWYLYSVRDRKYPTGLRTNRATAAGYWKATGKDKQVYGGGGLVGMKKTLVFYKGRAPRGQKTKWVMHEFRLDPHSSPSLSKDEWVICRIFHKSGEKRTPTTTPAPLLLHHQQHDPSSLFNDHISHSHNHNQNLLSPLLHPFPIPEETTKTRSSTINSNHYPPPPPSSQHSLKLNKSTKLTKTVPPSPSFFQYQQLLEDYPNLLHWIDSGNNNNNNCNANNTASSVEIMDAAAAGLIAFSSGGPSPTPNNNNNNNNNNAEIMMMSSSSASMLHILDDAPLGIQSWPHHHHHHLL* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0308 367 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 296 - -
Amo08g0308 367 Gene3D NAC domain 28 170 IPR036093 GO:0003677|GO:0006355
Amo08g0308 367 SUPERFAMILY NAC domain 14 166 IPR036093 GO:0003677|GO:0006355
Amo08g0308 367 PANTHER PROTEIN CUP-SHAPED COTYLEDON 3 10 296 - -
Amo08g0308 367 ProSiteProfiles NAC domain profile. 19 166 IPR003441 GO:0003677|GO:0006355
Amo08g0308 367 Pfam No apical meristem (NAM) protein 20 145 IPR003441 GO:0003677|GO:0006355
Amo08g0308 367 MobiDBLite consensus disorder prediction 192 246 - -
Amo08g0308 367 MobiDBLite consensus disorder prediction 192 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0308 Amo-Chr8 5701229 5702685 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0308 1 171 NAC Transcription Factor Family AT1G76420 71.264 4.43e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo08g0308 NAM 9.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0308 - - aip:107607453 653.669