Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0307 ATGCTAATACAAAGTTCCCTTCTAAGTTCAGTTGAGGCTGGTTCATGTTATGTAACTGATGATGGAAAAGATATTCTTTGTGACCGGATGCCTAGTGGTCAAACTTGGCAGGCATACATGAAATGCAGCAACTACCCTCTTAACTGGTGTGGAAAAGCTGAACAAACGAAAGAGGATAGAAGGAATGCTGATAATCCCTGCAACTCGAACTGTCTAAGTGGCTTAGGTCAGCCATCAACTGCTAGTATCATGACTGATAATACTGCACCTAACATGGTATACAGGAGAAAAAAGCTACGTAAGGGGCTAAATGCTCCTCTTTCCAATTGCCGGTCAGTCATAAGTTCTTCTGTGCGTTTATCATCAGCTGAGGATCGGCCAGGTAGTTTCCAAGTTAAAGACCATTCTGAAATGATAAGAAATCTTGTTGTTTCTTCTGTGCTGTTGGATGGGGTAGTTAAAGATAACATTCAGAAAAGTTTAGGAATTGACAGTGTAAATGATAGTTGCTCTTCTTCAAAATCAAATATGGAACTTGTTTCAGATTCAGTAGAAACTGAAATTGATGAACCTGGTGAATGCTCCTCATCCAGTGCAATAGTTTTGGATGTTACAAGGGAAGCAAAGAGAGAAAAAGATTCTTGCATGAATATTCTAAGAAGCTATGGTCTTAGAGGAGATTGTTTTGCAGATAATGCTGCCTCTTTGGAAACTGTTGTTACTGCTGGTAATATCTGCTGTTCCAGATTGTGCAAAACATGTGGTAGGTTGGACAGTTCATTGAACATGCTTCTATGTGATCATTGCGAAGATGCATATCATCCAACTTGCTATAACCCACGTTTTAAAAAATTACCAACCGATGAGTGGTTTTGCCATTCATGTCTTACAAAAAGTCACAAAATTCTCAGAGAGACAATAATCAAATCACCAGGTATTCACAATGAACTGGGTAAATGTAGAACTGCTTCTGTTAAGGCAGAATTGAATCCCATACTGTTGATGCTGAGAGAAACTGAGCCATATACAACCAAGGTGCGGGTTGGTAAAGGTTTTCAAGCTGAAGTACTTGGTTGGTTAGGTCCTCAGGGAAGTGATGAAGATGAACTTCCTGAACCGTTGGAAATAAATCATTTGGAGTTTTCAACACTGCAGGAAGAGAATCAAAGAAATCCAACTAGACTCAGTTCCATAGGAAATTGGCTTCAGTGTCAGGAGATTATAAATAGAGCCAATGGAACTGTGTGTGGAAAATGGCGCAGAGCTCCACTTTTTGAAGTTCAAGCTGATGATTGGGAGTGCTTCTGTGGTATCCATTGGGATCCATATCATGCTGATTGTGCCGTACCCCAGGAGCTCGAAACAGATCAAGTTCTAAAGCAGCTTAAGTATATAGAAATGATTCTCACTCACGTATATGCCATACAGCTAAGGCCTCAACTTACTGCCAAACAGAGAAAATCAGATTGCAATAGCAGTGGTGATTGA 1488 0.4012 MLIQSSLLSSVEAGSCYVTDDGKDILCDRMPSGQTWQAYMKCSNYPLNWCGKAEQTKEDRRNADNPCNSNCLSGLGQPSTASIMTDNTAPNMVYRRKKLRKGLNAPLSNCRSVISSSVRLSSAEDRPGSFQVKDHSEMIRNLVVSSVLLDGVVKDNIQKSLGIDSVNDSCSSSKSNMELVSDSVETEIDEPGECSSSSAIVLDVTREAKREKDSCMNILRSYGLRGDCFADNAASLETVVTAGNICCSRLCKTCGRLDSSLNMLLCDHCEDAYHPTCYNPRFKKLPTDEWFCHSCLTKSHKILRETIIKSPGIHNELGKCRTASVKAELNPILLMLRETEPYTTKVRVGKGFQAEVLGWLGPQGSDEDELPEPLEINHLEFSTLQEENQRNPTRLSSIGNWLQCQEIINRANGTVCGKWRRAPLFEVQADDWECFCGIHWDPYHADCAVPQELETDQVLKQLKYIEMILTHVYAIQLRPQLTAKQRKSDCNSSGD* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0307 495 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 298 IPR013083 -
Amo08g0307 495 ProSiteProfiles Zinc finger PHD-type profile. 248 298 IPR019787 -
Amo08g0307 495 Gene3D - 399 464 - -
Amo08g0307 495 ProSiteProfiles Zinc finger CW-type profile. 395 455 IPR011124 GO:0008270
Amo08g0307 495 ProSitePatterns Zinc finger PHD-type signature. 251 295 IPR019786 -
Amo08g0307 495 PANTHER REMODELING AND SPACING FACTOR 1 27 488 - -
Amo08g0307 495 Pfam PHD-finger 251 297 IPR019787 -
Amo08g0307 495 PANTHER HISTONE ACETYLTRANSFERASE 27 488 - -
Amo08g0307 495 SMART PHD_3 250 296 IPR001965 -
Amo08g0307 495 SUPERFAMILY FYVE/PHD zinc finger 249 303 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0307 Amo-Chr8 5657948 5663590 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0307 250 296 C2H2 Transcription Factor Family AT3G01460 40.426 1.30e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo08g0307 PHD 1.3e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0307 - - gmx:100813057 684.485