Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0300 ATGACTCGTCCCTTGAGAATTTTAGGCGAGCGCAACTCGTCAACCACCGACAACGCCCCCTCCGTCGTCGACTCCGACTTCGTCGTCATCCTCGCCGCCCTCATCTGCGCCCTCATCTGCGTTCTCGGACTGGTCGCTGTAGCTCGCTGCGCTTGTCTCCGCCGCCTCCGCCTCTCATCCTCCTCCGCCGCCGCTACTCCCTCGCTTCCCGCAGCTGCCAACAAAGGTGTCAAGAAGAAGGTACTCAGCTCTCTCCCCAAGGTCACCGCCACAGTCGAGTCGGCTGGCAAGTTCTCCGACTGCGCGATCTGCCTGGCGGAGTTCGCAGCCGGAGATGAGATCCGAGTGCTGCCTCAGTGTGGCCACGGCTTCCACGTGTCGTGTATCGACGCGTGGCTGAGGTCGCATTCATCGTGTCCATCGTGCCGTCAGATTCTGGTGGTTCCGAGATGCAACAAGTGCGGTGGTTTTCCAGCACCCGCGAGCTCGAGCACCACTGCAACCGCCTCTCAGCCACCGGAATCGGATTCCACATTCAAGGTAAGCGGCGATCATGCCAATAGGTTTTTACCTTAG 576 0.6042 MTRPLRILGERNSSTTDNAPSVVDSDFVVILAALICALICVLGLVAVARCACLRRLRLSSSSAAATPSLPAAANKGVKKKVLSSLPKVTATVESAGKFSDCAICLAEFAAGDEIRVLPQCGHGFHVSCIDAWLRSHSSCPSCRQILVVPRCNKCGGFPAPASSSTTATASQPPESDSTFKVSGDHANRFLP* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0300 191 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 173 - -
Amo08g0300 191 SUPERFAMILY RING/U-box 94 149 - -
Amo08g0300 191 SMART ring_2 101 142 IPR001841 -
Amo08g0300 191 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Amo08g0300 191 PANTHER RING-H2 FINGER PROTEIN ATL8 1 173 - -
Amo08g0300 191 CDD RING-H2_PA-TM-RING 100 143 - -
Amo08g0300 191 MobiDBLite consensus disorder prediction 162 182 - -
Amo08g0300 191 Pfam Ring finger domain 100 143 IPR001841 -
Amo08g0300 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 147 IPR013083 -
Amo08g0300 191 MobiDBLite consensus disorder prediction 162 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0300 Amo-Chr8 5354541 5356419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0300 5 154 C3H Transcription Factor Family AT1G20823 66.038 7.62e-65 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0300 - - gmx:100794614 216.853