Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0290 ATGATTTCTGGAGGGACTATGCATGTGGGTATGGACTTTCCTCATCAATTTACTATGCTAGAAGGTGAAAATGATAAAGGAAATGTATTAGTTATGGAAGATGAGAAATCAGAAGATTTGAGTAATGTAAGACAAATGGCAAGGGGCAAACCTCCGCGCCACCTTGGCTCCGGCATGAGACATAGTATTAGCACCACTAGATTGGTTGCTGCACCAGATTTGAGTTTGGATGTGGAGGTTACAGGGTGCAAGTCATCTTCTGAAGACAACACAGAGTTTCTACCCATATTTCGGTCAGGAAGTTGTGCTGAAAAAGGACCTAAAGAATATATGGAAGATGAACATATATGCATAGATGATCTTATTCAGCATCTAGGTTCATCTTCAAATTTTCCTTTTACAGGAGCTTTCTATGGTGTGTTTGATGGGCATGGAGGTACAGATGCAGCTTCTTTTATAAGAAATAACATCCTTAGATTCATACTTGAGGACTCCCATTTTCCAACTTGCGTGGCAAAGGCAATTACAAGTGCTTTCTTGAAAGCTGATTATGCATTTGCAGATTCTAGTTCGTTAGATATCTCCTCTGGAACCACTGCTTTAACAACTCTTGTATATGGAAGGACCATGATGGTCGCCAATGCCGGGGACTGTAGAGCTGTACTGGGGAGGCGAGGTAGAGCGGTCGAGATGTCAACAGACCAGAAACCAAATCGTATTTCAGAGAGGCTGAGGATTGAGAGGCTTGGTGGTGTAGTATACGATGGATACTTGAACGGGCAGCTGTCGGTTTCCCGTGCTCTAGGAGACTGGCACATGAAAGGTCCCAAGGGCTCTGCATGCCCTCTGAGCGCAGAACCTGAGTTGCAAGAAATCAACCTGAGTGAGGACGACGAGTTCTTGATAATGGGTTGTGATGGATTATGGGACGTGATGAGTAACCAATGCGCTGTGACAATGGCAAGGAAAGAATTAATGATACATAATGATCCTGAAAGGTGTTCAAGAGAGCTGGTCAGAGAGGCTCTTAAGCGCAACTCTTGTGATAACTTAACAGTGATCGTGGTGTGTTTCTCACAAGATCCTCCTCCAAGAATAGAGACACCACCTTCTCGAGTCAGAAGGAGCATATCTGCAGAAGGCCTCAATTTACTCAAGGGTGTATTGGACTCTTAG 1176 0.4405 MISGGTMHVGMDFPHQFTMLEGENDKGNVLVMEDEKSEDLSNVRQMARGKPPRHLGSGMRHSISTTRLVAAPDLSLDVEVTGCKSSSEDNTEFLPIFRSGSCAEKGPKEYMEDEHICIDDLIQHLGSSSNFPFTGAFYGVFDGHGGTDAASFIRNNILRFILEDSHFPTCVAKAITSAFLKADYAFADSSSLDISSGTTALTTLVYGRTMMVANAGDCRAVLGRRGRAVEMSTDQKPNRISERLRIERLGGVVYDGYLNGQLSVSRALGDWHMKGPKGSACPLSAEPELQEINLSEDDEFLIMGCDGLWDVMSNQCAVTMARKELMIHNDPERCSRELVREALKRNSCDNLTVIVVCFSQDPPPRIETPPSRVRRSISAEGLNLLKGVLDS* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0290 391 CDD PP2Cc 97 358 IPR001932 -
Amo08g0290 391 PANTHER PROTEIN PHOSPHATASE 2C 7 380 IPR015655 GO:0004722|GO:0006470
Amo08g0290 391 SUPERFAMILY PP2C-like 92 359 IPR036457 -
Amo08g0290 391 SMART PP2C_4 88 356 IPR001932 -
Amo08g0290 391 ProSitePatterns PPM-type phosphatase domain signature. 137 145 IPR000222 GO:0043169
Amo08g0290 391 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 7 380 - -
Amo08g0290 391 Gene3D - 77 362 IPR036457 -
Amo08g0290 391 ProSiteProfiles PPM-type phosphatase domain profile. 98 358 IPR001932 -
Amo08g0290 391 Pfam Protein phosphatase 2C 99 350 IPR001932 -
Amo08g0290 391 MobiDBLite consensus disorder prediction 37 59 - -
Amo08g0290 391 SMART PP2C_SIG_2 113 358 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0290 Amo-Chr8 5205559 5207973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0290 9 390 PP2C-type Phosphatase Gene Family AT2G33700 71.094 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0290 K14803 - gmx:100778015 651.744