Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0274 ATGAAAGGTGCAAAGTCCAAAGCCGAATCCAAGAGAGGCGATGCCAAGCTTGCCGTGAATAAGAAAGGAACTCCGGCCACGAAGGGCGGTAGGAAAACCGGCAAGGGAAAAGCCGCCAAAGACCCTAACAAGCCAAAGAGGCCACCGAGTGCTTTCTTCGTTTTCATGGAAGAATTTAGGAAACAGTTCAACAAGGATCATCCTGAAAACAAAGCAGTATCTGCTGTGGGCAAGGCTGCTGGAGCTAAATGGAAACAAATGTCTGATGCTGAAAAAGCACCTTATGTGGCAAAGTCAGAGAAACGAAAGCAGGACTATGAGAAGAACATGAGAGCCTACAACAAAAAACAGGCTGAAGGTCCTACTGGTGGAGATGAAGAGGAATCAGACAAATCAATATCCGAGGTCAATGATGAAGATGATGATGAGGATGGAAGCGGCGAGGAAGACGATGACGAGTAG 462 0.4697 MKGAKSKAESKRGDAKLAVNKKGTPATKGGRKTGKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKDHPENKAVSAVGKAAGAKWKQMSDAEKAPYVAKSEKRKQDYEKNMRAYNKKQAEGPTGGDEEESDKSISEVNDEDDDEDGSGEEDDDE* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0274 153 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 152 IPR031061 -
Amo08g0274 153 SMART hmgende2 44 115 IPR009071 -
Amo08g0274 153 SUPERFAMILY HMG-box 32 119 IPR036910 -
Amo08g0274 153 Gene3D High mobility group box domain 29 124 IPR036910 -
Amo08g0274 153 Coils Coil 96 116 - -
Amo08g0274 153 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 1 152 - -
Amo08g0274 153 MobiDBLite consensus disorder prediction 1 18 - -
Amo08g0274 153 MobiDBLite consensus disorder prediction 1 51 - -
Amo08g0274 153 Pfam HMG (high mobility group) box 45 114 IPR009071 -
Amo08g0274 153 MobiDBLite consensus disorder prediction 131 153 - -
Amo08g0274 153 CDD HMGB-UBF_HMG-box 45 111 - -
Amo08g0274 153 MobiDBLite consensus disorder prediction 79 153 - -
Amo08g0274 153 MobiDBLite consensus disorder prediction 94 130 - -
Amo08g0274 153 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0274 Amo-Chr8 4977735 4980527 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Amo08g0274 HMG_box 1.7e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0274 K25507 - gmx:100500173 220.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0274 08 4977735 4980527 Amo17g2002 17 102563210 102564963 hybridization