Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0269 ATGAGCTGCTTCTCGTGCTTTGTTTCTCGCGCCAAAGATGCCAGCAGAGTCGAAATTGACACTGGTTCTCGATCTGCTTCCTCAGGCTCTGGTGGAGGGAAATACACTGCTGCTACTGAGAGTGAAAGGAGGAAGAAGGAATCGTATTCGGAGGGGAAGGGGAAGAGTACGAGTAATGGGAAAAGCAGCACGGCGGCGGCGAGCTTTGGATTCCGAGAGCTGGCGGCGGCAACACGGGGTTTCAACCAAGTCAATTTGATCGGTGAGGGCGGTTTCGGACGCGTTTACAAGGGTCGCCTCTCTACTGGCCAGGTTGTTGCCATAAAGCAGTTAAGTCATGATGGTCATCAGGGCTTTCAGGAATTTGTGATGGAGGTTCTTATGTTAAGCCTTCTTCACCATTCTAACCTTGTCAGGCTCATAGGTTATTGCACCGATGGAGATCAAAGGCTTTTAGTTTATGAGTATATGCCTATGGGTTGCCTTGAAGATCATCTCTTTGATCCTCCCCAAGACAAAGAACCACTAAGTTGGAGTACYCGGATGAAGATTGCTGTTGGGGCTGCCCGAGGCCTTGAGTATCTRCATTGTAGAGCTGATCCGCCAGTTATTTATCGAGACTTGAAGTCTGCAAATATCTTATTAGACAATGAATTCAATCCCAAACTGTCAGATTTTGGGCTTGCTAAACTTGGACCTGTTGGAGACAATACCCATGTTTCAACAAGGGTGATGGGAACATATGGCTACTGTGCACCAGAATATGCCATGAGTGGCAAATTAACACTTAAATCTGATATATACAGCTTTGGCGTGGTTTTGTTGGAGTTGATCACTGGGCGTAGGGCAATAGATAGTAGCAGAAGACCAGGGGAGCAAAACTTAATTTCATGGGCTCGCCCATGTTTTGGGGACCGGAGAAAGTTCATACAATTGGTTGATCCCCTTTTGCAAGGGAACTTCCCCTTGCGCTGTTTACATCAGGCAATTGCCATTACTGCAATGTGTCTACAGGAGCAACCAAAAGTCCGGCCGCTAATCGGTGATATTGTTGTTGCATTGGAGTACCTAGCCTCTCAGAGTATCCCTGAACATCATAGACAGAACCCACCATTGCAATATTCAGAAATCGACAGAAGTTAA 1143 0.4672 MSCFSCFVSRAKDASRVEIDTGSRSASSGSGGGKYTAATESERRKKESYSEGKGKSTSNGKSSTAAASFGFRELAAATRGFNQVNLIGEGGFGRVYKGRLSTGQVVAIKQLSHDGHQGFQEFVMEVLMLSLLHHSNLVRLIGYCTDGDQRLLVYEYMPMGCLEDHLFDPPQDKEPLSWSTRMKIAVGAARGLEYLHCRADPPVIYRDLKSANILLDNEFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRRAIDSSRRPGEQNLISWARPCFGDRRKFIQLVDPLLQGNFPLRCLHQAIAITAMCLQEQPKVRPLIGDIVVALEYLASQSIPEHHRQNPPLQYSEIDRS* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0269 380 SUPERFAMILY Protein kinase-like (PK-like) 63 355 IPR011009 -
Amo08g0269 380 CDD STKc_IRAK 87 355 - -
Amo08g0269 380 PANTHER OS07G0668900 PROTEIN 1 363 - -
Amo08g0269 380 Gene3D Phosphorylase Kinase; domain 1 39 156 - -
Amo08g0269 380 MobiDBLite consensus disorder prediction 13 63 - -
Amo08g0269 380 SMART serkin_6 81 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g0269 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Amo08g0269 380 Pfam Protein kinase domain 82 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g0269 380 Gene3D Transferase(Phosphotransferase) domain 1 157 374 - -
Amo08g0269 380 ProSiteProfiles Protein kinase domain profile. 81 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g0269 380 MobiDBLite consensus disorder prediction 20 35 - -
Amo08g0269 380 ProSitePatterns Protein kinases ATP-binding region signature. 87 109 IPR017441 GO:0005524
Amo08g0269 380 PANTHER OS07G0668900 PROTEIN 1 363 - -
Amo08g0269 380 MobiDBLite consensus disorder prediction 38 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0269 Amo-Chr8 4864769 4868427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0269 1 371 Glycoside Hydrolase AT3G07070 58.400 1.60e-155 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Amo08g0269 Pkinase 4.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0269 - - gmx:100796595 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0269 08 4864769 4868427 Amo17g2014 17 102854077 102857411 hybridization