Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0268 ATGAGCATCGTCATGCTACTAATTCCAATAATAATAATAATAAACCACCTGCAGGTATTGAATTCTTTCGTTCTTTCTTATTCTTTATATATGTTAGGTTTAAGTCTCTTCTTCTTTGCATCAGAAAGTAGGAAGGAGAAGGGAGTGATGAAGAAGGTGACGCCGAATCTGAGAATATTTACATTGGATGAGCTGAAAACTGCGACAAGGAATTTCAGACCGGACACTATGTTAGGTGAGGGTGGTTTTGGTCGCGTCTTTAAAGGATGGATTGACCAAAATACCCTCAAGCCTTCCAAAGTCGGAGTTGGAATTCCGGTTGCCGTTAAGAAGTCTAACCCCGACAGCCTCCAAGGCCTCCAAGAATGGCAGAGTGAGGTGAAATTCTTGGGGAAGTTTTCTCATCCAAACCTGGTTAAACTAGTGGGATATTGTTGGGAGGAGAATCAATTCTTGCTAGTATACGAATACATGCAAAAGGGCAGCTTGGAAAACCACCTCTTCAGAAGCCCAGAACCGCTTTCATGGGATATAAGGGTGAAGATAGCCATTGGAGCTGCGAGAGGCTTGGATTTCTTACATACGTCAGAGAAATCTGTAATCTATAGAGACTTCAAGTCCTCTAATATTCTTCTTGACGGGGATTACAACGCAAAGCTGTCGGACTTTGGATTGGCAAAGCTTGGCCCAGTTAACGGCAGATCCCATGTAACCACACGTGTCATGGGAACCTACGGTTATGCCGCCCCTGAGTATATGGCAACAGGTCATTTGTACGTAAAAAGTGATGTATACGGATTTGGCGTAGTCCTACTAGAAATGTTAACAGGCCTAATTGCTTTGGACACAAATAGGCCCTCAGGTCAACAGAATTTAGTAGAGTGGGTTAAGCCCTCTCTTTACGAGAAAAGGAAATTAAAAAATAGAATGGATCCAAATTTGAGTGAACAATATCCCAAAAAAGCTGCTTTTGAGATAGCACAGCTTATATTACAATGCTTGGAAGAAGATCCAAAGAACCGACCATCCATGGAACAAGTCTTACAAACATTAGAGAAGGTACAAAGCATAAGATATAAACCCAAAGTGAAGAAAGACAGTGGCATAATGCATCATCAACAACGTCATCACTCTCCTTCCCCTCAAAACTAG 1152 0.4184 MSIVMLLIPIIIIINHLQVLNSFVLSYSLYMLGLSLFFFASESRKEKGVMKKVTPNLRIFTLDELKTATRNFRPDTMLGEGGFGRVFKGWIDQNTLKPSKVGVGIPVAVKKSNPDSLQGLQEWQSEVKFLGKFSHPNLVKLVGYCWEENQFLLVYEYMQKGSLENHLFRSPEPLSWDIRVKIAIGAARGLDFLHTSEKSVIYRDFKSSNILLDGDYNAKLSDFGLAKLGPVNGRSHVTTRVMGTYGYAAPEYMATGHLYVKSDVYGFGVVLLEMLTGLIALDTNRPSGQQNLVEWVKPSLYEKRKLKNRMDPNLSEQYPKKAAFEIAQLILQCLEEDPKNRPSMEQVLQTLEKVQSIRYKPKVKKDSGIMHHQQRHHSPSPQN* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0268 383 CDD STKc_IRAK 78 353 - -
Amo08g0268 383 ProSiteProfiles Protein kinase domain profile. 72 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g0268 383 Gene3D Phosphorylase Kinase; domain 1 56 157 - -
Amo08g0268 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Amo08g0268 383 ProSitePatterns Protein kinases ATP-binding region signature. 78 111 IPR017441 GO:0005524
Amo08g0268 383 Pfam Protein tyrosine and serine/threonine kinase 76 351 IPR001245 GO:0004672|GO:0006468
Amo08g0268 383 PANTHER SERINE/THREONINE-PROTEIN KINASE CX32, CHLOROPLASTIC-RELATED 48 374 - -
Amo08g0268 383 Gene3D Transferase(Phosphotransferase) domain 1 158 376 - -
Amo08g0268 383 MobiDBLite consensus disorder prediction 362 383 - -
Amo08g0268 383 SUPERFAMILY Protein kinase-like (PK-like) 57 365 IPR011009 -
Amo08g0268 383 PANTHER OS01G0588500 PROTEIN-RELATED 48 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0268 Amo-Chr8 4842646 4845360 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0268 41 351 Glycoside Hydrolase AT3G07070 49.211 2.63e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Amo08g0268 PK_Tyr_Ser-Thr 4.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0268 - - aprc:113865973 547.354