Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0267 ATGGGAAATTGTTTCCGGAAGCCGAGTAATAACAAGATTAATGAGCATCATGCTACTAATTCCAATCATAATAATAATAAACCACCTGCAGAAAGTAGGAAGGAGAAGGGAGTGATGAATAATAAGGTGACGCCGAATCTGAGAATATTTACATTGGATGAGCTGAAAACTGCGACAAGGAATTTCAGACCGGACACTATGTTAGGTGAGGGTGGTTTTGGTCGCGTCTTTAAAGGATGGATTGACCAAAATACCCTCAAGCCTTCCAAAGTCGGAGTTGGAATTCCGGTTGCCGTTAAGAAGTCTAACCCCGACAGCCTCCAAGGCCTCCAAGAATGGCAGAGTGAGGTGAAATTCTTGGGGAAGTTTTCTCATCCAAACCTGGTTAAACTAGTTGGCTATTGTTGGGAGGAGAATCAATTCTTGCTAGTATACGAATACATGCAAAAGGGCAGTTTGGAAAACCACCTCTTCAGAAGCCCAGAACCGCTTTCATGGGATATAAGGGTGAAGATAGCCATTGGAGCTGCGAGAGGCTTGGATTTCTTACATACGTCAGAGAAATCTGTAATCTATAGAGACTTCAAGTCCTCTAATATTCTTCTTGATGGGGATTACAACGCAAAGCTGTCGGACTTTGGATTGGCAAAGCTTGGCCCAGTTAACGGCAGATCCCATGTAACCACACGTGTCATGGGAACCTACGGTTATGCCGCCCCTGAGTATATGGCAACAGGTCATTTGTACGTGAAAAGTGATGTATATGGATTTGGCGTAGTCCTACTAGAAATGTTAACAGGCCTAATTGCTTTGGACACAAATAGGCCGTCAGGTCAACAGAATTTAGTAGAGTGGGTTAAGCCCTCCCTTTACGAGAAAAGGAAATTAAAGAAGAGAATGGATCCAAATTTGAGTGAACAATATCCCAAAAAAGCTGCTTTTGAGATAGCACAGCTTATATTACAATGCTTGGAAGAAGATCCAAAGAACCGACCATCCATGGAACAAGTCTTACAAACATTAGAGAAGGTACAAAGCATAAGATATAAACCCAAAGTGAAGAAAGAGAGTGGCATAATCCATCATCAACAACGTCATCACTCTCCTCCTTCAAATAAATCATAA 1125 0.4204 MGNCFRKPSNNKINEHHATNSNHNNNKPPAESRKEKGVMNNKVTPNLRIFTLDELKTATRNFRPDTMLGEGGFGRVFKGWIDQNTLKPSKVGVGIPVAVKKSNPDSLQGLQEWQSEVKFLGKFSHPNLVKLVGYCWEENQFLLVYEYMQKGSLENHLFRSPEPLSWDIRVKIAIGAARGLDFLHTSEKSVIYRDFKSSNILLDGDYNAKLSDFGLAKLGPVNGRSHVTTRVMGTYGYAAPEYMATGHLYVKSDVYGFGVVLLEMLTGLIALDTNRPSGQQNLVEWVKPSLYEKRKLKKRMDPNLSEQYPKKAAFEIAQLILQCLEEDPKNRPSMEQVLQTLEKVQSIRYKPKVKKESGIIHHQQRHHSPPSNKS* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0267 374 MobiDBLite consensus disorder prediction 353 374 - -
Amo08g0267 374 Pfam Protein tyrosine and serine/threonine kinase 66 341 IPR001245 GO:0004672|GO:0006468
Amo08g0267 374 ProSiteProfiles Protein kinase domain profile. 62 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g0267 374 MobiDBLite consensus disorder prediction 1 27 - -
Amo08g0267 374 MobiDBLite consensus disorder prediction 1 40 - -
Amo08g0267 374 Gene3D Transferase(Phosphotransferase) domain 1 148 365 - -
Amo08g0267 374 PANTHER OS01G0588500 PROTEIN-RELATED 15 364 - -
Amo08g0267 374 Gene3D Phosphorylase Kinase; domain 1 46 147 - -
Amo08g0267 374 SUPERFAMILY Protein kinase-like (PK-like) 47 353 IPR011009 -
Amo08g0267 374 PANTHER SERINE/THREONINE-PROTEIN KINASE CX32, CHLOROPLASTIC-RELATED 15 364 - -
Amo08g0267 374 CDD STKc_IRAK 68 343 - -
Amo08g0267 374 ProSitePatterns Protein kinases ATP-binding region signature. 68 101 IPR017441 GO:0005524
Amo08g0267 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0267 Amo-Chr8 4811177 4814497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0267 10 341 Glycoside Hydrolase AT3G07070 47.321 5.69e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Amo08g0267 PK_Tyr_Ser-Thr 3.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0267 - - aprc:113865973 567.385