Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0264 ATGAGAGATGGTGGAGTGTTATCATCAGGTACCATGCTGGAACCTACTCCTCCTCCTCCTCCTCCTTCACCACTACCACCACCGCCACCACCTCCTTCAGAGGTAGCAACAACAACAACAACATCAATATTAATGGACTTTGATTACATCAATGAACTCTTTGTAGATGGTTGCTGGTTAGCAGCTTCTTCTTCTTCTGCTGCTGCTGCTGCCGATGGATCTGCTGATTTCTATGTGTCAAGTCCTTCTTTTTCAAACCCCATATTTGATCCTTTCTCTTGGCCTTCCTTGGATACTGAACAAATTGAATCCCAAGAACGAGAACAGGAACATGAACAACAACAACAACCACCACCTTTTAGCCATGACTTAGTTGTTGCTGCTAATAGTTGTAGCCGGAATCAGCAACAACAGTATCATCACTATGAGAATCAGTCAGTGGAAAACAATAATCCAAATCCTAATAATCCTTCTGAGTTTTTCAGAAGGTGGTGGATTGCACCAAGTTCTAATCCGGGACCTGGATCTTATGTCGTTGAGAAGCTATTGAAGGCACTCATGTGTATCAAAGATGTGAACAGAAACAAAGACATGCTTATACAAATATGGATTCCAGTTATGAACAGAGGAGGCACTCAGATTCTCAGAACCAATGGGCTTCCATTCTCACTTGAATCAAGGTCTGTGAACCTTGCAAAGTACAGGGAAATCTCGGAGGTGTACCAGTTCTCTGCCGAGGAGGATTCGAAGGAGTTGGTGCCCGGATTGCCAGGGAGAGTTTACAAGGAGAAGGTTCCTGAGTGGACTCCTGATGTTAGATTCTTCAGGAGCTATGAATATCCAAGAGTTGACCATGCTCAAGTCTATGATGTGAGAGGATCATTGGCACTTCCAATCTTTGAGCAAGGTAGCAAGAATTGCTTAGGTGTTGTTGAAGTTGTCATGACTCAACAGAAAATCAACTATCGCCCTGAACTTGAAAGTGTTTGCCAAGCACTTGAGGCTGTTAATCTTACAAGCTCAAAACTTCCAACTATTCAGAATGTGAAGGTAAAAATGAAAAAAAAAAAAAAGAAAAATCATCTGAGACATACATCATGTGAAAAGTCCTATGAAACTGCATTGCCTGAGATTCAAGAAGTATTAAGATCTGCATGTGAAATTCACAAATTGCCATTGGCACAGACATGGATTCCATGCATCAAACAAGGCAAAGAAGGATGCCGGCACTCAGAAGACAACTATCCACACTGCATATCTCCAGTGGAGCATGCTTGCTATGTTGGTGACCCTTCAATCCAGGTCTTTCATGAGGCATGCTCTGAGCATCACTTGTTAAAAGGCCAAGGTGTTGCCGGCGGAGCATTCATGACGAATCAGCCTTGCTTCGCACCCGACATAACTTTGTTAAGCAAGACAGACTATCCACTTTCTCATCATGCAAGGATGTTTGGATTGCGCGCTGCAGTCGCCATACGCTTGCGAAGCATCTATAATAGTTCAGATGACTTTGTTCTTGAGTTCTTCTTGCCTTTGGAATGCATTGACAATGATGAACAGAAGAAGATGCTCACTTCATTGTCATTGATCATACAAAGGGTTTGCCATAGCTTGAGGGTTATATCAGATAAGGAATTGGAGGAGGAAACTGATTTTTCAGTTGAAGAAGTGATAGCTCATGAAGATAGTGGCACTTTTGCTAGTGCTGCAGCGTGGCCAGAACCACTGCAGAGTCAAATTGTTGCTTCATTGGGTGCTCAAGAAAAATCAAGTGAAACTATGGGGACGAGTTTCTCCGACCAAAGGCAACAACAGCAAGAGAGTTCTGTTTTGAAAGGGAACCTTGACTCTAATGGGGAGTGTTCTACTTATAATGTCGGGAACTTGTCAAGTAAAACCGGAGACAAGAAGAAGAGCAAAGTAGATAAGACTATCACTCTGCAAGTTCTTCGCCAACACTTCGCCGGAAGCCTAAAAGATGCAGCAAAGAACATTGGTGTTTGTACTACAACGTTAAAAAGGATCTGCCGGCAACATGGGATAAAACGTTGGCCTTCAAGGAAGATCAAGAAGGTTGGTCATTCCTTGCAGAAGCTTCAACTTGTAATCGACTCGGTCCAAGGTGCTTCTGGTGCATTCCAAATAGATTCCTTCTATTCAAAATTCCCAGACTTAGCTGCTTCTCCAAATCTATCAGGAACAAGCCTGTTCTCAAATCTCAAGCAATGTGATAATAATCCAAACTCACTAAGCATACAGCCGGATCCTGGTTCGCTGAGTCCGGAAGGCGCATCAAAATCGCCGTCCTCTTCTTGCAGCCAGAGCTCGATTTCTAGCCATCCATGTTCCAGCATGGCTGAGCAACAGAATCATCATCTCACAAATAATAATTTTGATAGTAGCAAAGATCAAATGGTGTTATTGGTTGGAGAGAATTCTAGCGGCGATGGCTTGTTGAAGAGGATAAGAAGTGAAGCAGAATTGAAAAGCTTGAATGAAGATAGAGTAAAAATAGTCATGCCAAGATCGCAAAGTCAAGAAACACTTGGTCAACATAACGTTCAAAATGGGCACCATGGATCATTGTCAAGAACCAAAAGCAAAGGGACTCAAAAGGAGGATGCAGCTTATAGAGTGAAAGTAACATATGGGGATGAGAAAGCAAGGTTCAAGATGCCTAAGAATTGGGGCTATGAAGATCTTGTGCAAGAAGTTGGTAGGAGATTCTGCATAAGTGACATGAGCAAATTTGATGTCAAATATTTGGATGATGATTATGAATGGGTGCTACTAACCTGTGATGATGATTTAGAAGAATGCATTGAAGTTTGTCAATCATCTGAGAGCACCACCATCAAGCTTTGTCTTCAACTCTCTAATACTAATCATAGTATGCGAAACCCTTTAGAATTTAGATAG 2919 0.4224 MRDGGVLSSGTMLEPTPPPPPPSPLPPPPPPPSEVATTTTTSILMDFDYINELFVDGCWLAASSSSAAAAADGSADFYVSSPSFSNPIFDPFSWPSLDTEQIESQEREQEHEQQQQPPPFSHDLVVAANSCSRNQQQQYHHYENQSVENNNPNPNNPSEFFRRWWIAPSSNPGPGSYVVEKLLKALMCIKDVNRNKDMLIQIWIPVMNRGGTQILRTNGLPFSLESRSVNLAKYREISEVYQFSAEEDSKELVPGLPGRVYKEKVPEWTPDVRFFRSYEYPRVDHAQVYDVRGSLALPIFEQGSKNCLGVVEVVMTQQKINYRPELESVCQALEAVNLTSSKLPTIQNVKVKMKKKKKKNHLRHTSCEKSYETALPEIQEVLRSACEIHKLPLAQTWIPCIKQGKEGCRHSEDNYPHCISPVEHACYVGDPSIQVFHEACSEHHLLKGQGVAGGAFMTNQPCFAPDITLLSKTDYPLSHHARMFGLRAAVAIRLRSIYNSSDDFVLEFFLPLECIDNDEQKKMLTSLSLIIQRVCHSLRVISDKELEEETDFSVEEVIAHEDSGTFASAAAWPEPLQSQIVASLGAQEKSSETMGTSFSDQRQQQQESSVLKGNLDSNGECSTYNVGNLSSKTGDKKKSKVDKTITLQVLRQHFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQIDSFYSKFPDLAASPNLSGTSLFSNLKQCDNNPNSLSIQPDPGSLSPEGASKSPSSSCSQSSISSHPCSSMAEQQNHHLTNNNFDSSKDQMVLLVGENSSGDGLLKRIRSEAELKSLNEDRVKIVMPRSQSQETLGQHNVQNGHHGSLSRTKSKGTQKEDAAYRVKVTYGDEKARFKMPKNWGYEDLVQEVGRRFCISDMSKFDVKYLDDDYEWVLLTCDDDLEECIEVCQSSESTTIKLCLQLSNTNHSMRNPLEFR* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0264 972 MobiDBLite consensus disorder prediction 843 873 - -
Amo08g0264 972 MobiDBLite consensus disorder prediction 746 788 - -
Amo08g0264 972 PANTHER PROTEIN NLP8 42 962 IPR045012 GO:0003700
Amo08g0264 972 SMART PB1_new 876 959 IPR000270 GO:0005515
Amo08g0264 972 MobiDBLite consensus disorder prediction 1 37 - -
Amo08g0264 972 Pfam RWP-RK domain 644 692 IPR003035 -
Amo08g0264 972 Pfam PB1 domain 877 957 IPR000270 GO:0005515
Amo08g0264 972 SUPERFAMILY CAD & PB1 domains 870 959 - -
Amo08g0264 972 PANTHER PROTEIN NLP4 42 962 - -
Amo08g0264 972 MobiDBLite consensus disorder prediction 13 35 - -
Amo08g0264 972 ProSiteProfiles PB1 domain profile. 876 959 IPR000270 GO:0005515
Amo08g0264 972 MobiDBLite consensus disorder prediction 843 864 - -
Amo08g0264 972 MobiDBLite consensus disorder prediction 99 120 - -
Amo08g0264 972 MobiDBLite consensus disorder prediction 591 616 - -
Amo08g0264 972 Gene3D - 873 956 - -
Amo08g0264 972 CDD PB1_NLP 878 957 IPR034891 -
Amo08g0264 972 ProSiteProfiles RWP-RK domain profile. 631 712 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0264 Amo-Chr8 4736531 4739979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0264 45 957 NLP Transcription Factor Family AT4G35270 41.291 0.0 660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Amo08g0264 PB1 1e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0264 - - ahf:112705709 1747.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0264 08 4736531 4739979 Amo17g2020 17 103303247 103307262 hybridization