Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0247 ATGCGTGTTTGGGTGTGCGTGTGTCTGAAGAAGCTGCTTCAAACACACTCACACCAACGGAAACATAACGGAGTTTACGTTATCTGCTTCCAACTAATGGGTTGTTGCCAATCTAATTCGAGCCGTCATAACTACCCTCGTCCGCTTACGGTTGCTTCCTCCCCTAACGGCGCCAACAACAATAACAACAATAACACCGTCGTTACTGGTGCCTCCGCCGCTGCCTCTGCCGCCCTAGACGTCCCTCCTTTCTCTGAGTTCTCCCTCTCCGACCTCAAATCGGCCACCAACGGCTTCAGCTCCGATCACATCGTCTCCGAGAGCGGCGACAAAGCCCCCAATGTGGTCTATAAGGGTCGCCTCAACAATCATAACCGACGTTTGATTGCCGTCAAGAGATTCTCCAAATCGGCATGGCCCGACCCCAAGCAGTTCGCTGATGAGGCTTGGAGTGTTGGGAAATTGAGGCACCCTAGGCTTGCGAATTTGATTGGGTATTGCTGTGATGGGGATGAGAGGCTTCTCGTTGCAGAATACATGCACAACGACACTCTCGCCAAACATCTTTTTCATTGGGAAAATCAGACAATTGAGTGGAGCATGCGATTAAGAGTTGCCCTGTCCATCACACAAGCATTGGATTATTGCAGTAACAAAGGTCACCCATTGTACCATGATCTGAATGCCTACAGAGTGCTATTTGATGAGAATGGTGATCCGAGGATTTCATGTTTTGGGCTGATTAAGAACAGTAGGGACGGAAAAAGTTATAGCACGAATCTTGCTTATACCCCTCCAGAGTACCTGAGAAACGGGAGGGTGACTCCAGAAAGTGTAATCTTCAGTTTTGGAACTGTGTTATTGGATCTACTAAGCGGCAAGCATATCCCTCCAAGTCATGCTCTTGACATGATAAGGGGTAAAAATATTCTACGTCTAATGGATTCACACTTGGAGGGAAACTTTTCCACCGATGAGGCAACTGTGGTTTTCGACCTTGCCTCAAAGTGCTTGCAATATGAACCTCGAGAGCGGCCCAAGATCAATGACCTTGTTACAACTCTGTCCAGACTGCAGAATAAACCCGATGTTCCATCATATGTCATGCTTGGCATTCCAAAGCACGAGGAAGCACCAGCACCGCCAACTCCCCAGCATCCTCTATCTCCAATGGGTGATGCTTGTTCTCGCATGGACCTTACAGCTATTCATCAGATATTGTTGATGACACACTATAAAGATGATGAAGGAACTAARGAGTTATCTTTCCAAGAATGGACTCAGCAAATGAGGGATATGTTGGAGGCAAGAAAGCGGGGCGACCTGGCATTCCGTGATAAGGATTTCAAAACTTCAATTGAGTGTTACTCCCAGTTCATTGATGTGGGAACCATGGTTTCCCCAACCGTTTATGCGCGGAGAAGTCTTTGCTACCTGTTTTGCGATCAACCGGATGCTGCGCTGCGAGATGCAATGCAAGCTCAGTTGGTCTATCCGGACTGGGCGACYGCATTTTACATGCAGGCTGTTGCWCTGTCCAAATTAAACATGGATAAGGATGCAGCTGACATGCTGAACGAGGCCGCTTCCTTAGAAGAGAAACGGCAAAGAGGAGGGAAATGA 1623 0.4787 MRVWVCVCLKKLLQTHSHQRKHNGVYVICFQLMGCCQSNSSRHNYPRPLTVASSPNGANNNNNNNTVVTGASAAASAALDVPPFSEFSLSDLKSATNGFSSDHIVSESGDKAPNVVYKGRLNNHNRRLIAVKRFSKSAWPDPKQFADEAWSVGKLRHPRLANLIGYCCDGDERLLVAEYMHNDTLAKHLFHWENQTIEWSMRLRVALSITQALDYCSNKGHPLYHDLNAYRVLFDENGDPRISCFGLIKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIFSFGTVLLDLLSGKHIPPSHALDMIRGKNILRLMDSHLEGNFSTDEATVVFDLASKCLQYEPRERPKINDLVTTLSRLQNKPDVPSYVMLGIPKHEEAPAPPTPQHPLSPMGDACSRMDLTAIHQILLMTHYKDDEGTKELSFQEWTQQMRDMLEARKRGDLAFRDKDFKTSIECYSQFIDVGTMVSPTVYARRSLCYLFCDQPDAALRDAMQAQLVYPDWATAFYMQAVALSKLNMDKDAADMLNEAASLEEKRQRGGK* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0247 540 ProSiteProfiles Protein kinase domain profile. 102 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g0247 540 Gene3D Transferase(Phosphotransferase) domain 1 181 372 - -
Amo08g0247 540 Coils Coil 514 534 - -
Amo08g0247 540 Pfam Protein tyrosine and serine/threonine kinase 115 355 IPR001245 GO:0004672|GO:0006468
Amo08g0247 540 Gene3D Phosphorylase Kinase; domain 1 75 179 - -
Amo08g0247 540 SUPERFAMILY Protein kinase-like (PK-like) 82 366 IPR011009 -
Amo08g0247 540 SUPERFAMILY TPR-like 436 533 IPR011990 GO:0005515
Amo08g0247 540 Gene3D Tetratricopeptide repeat domain 431 538 IPR011990 GO:0005515
Amo08g0247 540 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK11 33 539 - -
Amo08g0247 540 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 33 539 IPR045845 GO:0004672|GO:0009742
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0247 Amo-Chr8 4377729 4382375 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0247 56 381 Glycoside Hydrolase AT3G07070 32.011 1.55e-45 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Amo08g0247 PK_Tyr_Ser-Thr 7.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0247 K14500 - qsu:111999979 841.262