Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0235 ATGGATGATTCAACCTTAGATTATCAGATCAATCAGCGCAAAGTGGATTTTGAATTTGAATCAAATGAAGTTCCTGAGCCCCTCTCTGTTGTTGATGAGCAGCTTGGTCCCAAGGTTGGAATGAATTTTAAAACCCTTGAAGATGCTGCAAAATTTTACAAGGACTATGCCAAAGCTGCAAGTTTTTTTACAAGAGTTCGGAGCACAAATAAAAAGGAAAATGAAATTAAGAATCAATTGATCACATGTAGCAGAGAGGAAAAATGGAAATCTAAAATATCTCCGACCGAGAAGACAAATCCTACAGCTGGTTTAAATTGTCCTGCAAGAATTTATATATACACATTGAAGGATGTTGGTGCTTGGATCATTTCGAAGGTCATGCTGCATCATTCACACCCTTGCTGTCCAACTCAAATAGAGATGCTCAAACAGCACAGGGAACTAAGCATGTCCGTTCATCGTACAATAGAGAATAACGAGGAGGCCAGGATGAAAAGCACACAAAGGAGCGAGAGCATGCATTCATTTTTTAACAAGTTTATTACTCGGAACAGCTCACTTATTCAATTTGTCAAACAATACGATAATTGCCTCGGAAGCAGGGAGCAAGCAGAGAGAGAATCAGATGCTACACATTTTCATACAGTCATACCGTATGCAACCAAATCCTCCATTGAAGCTCAGTTTCAAGATTTTTACACTCATCAAAAGTTTAGGGAAGTCCAAGCACAATTTAGAGGAAAGGCGAATTGCATCACTAGATTAACGAATTCCGCTCTAGGCTATTTAGTATACGAAGTTGGAGAACAACTTTTCAGCTCAATATTCAACAAGTTTGTGGTTACTTATGACTCAGTAGTAGCCGAGGTAAAATGTCAATGCTTATTATTTGAGTCAAGAGGGATATTGTGCCATCACGCACTACGTGTGTTAAGCTTTGAACGAGTACTTCAAGTGTCATCGAGATATATATTAGAACGATGGAGCAAGAAGGTAAAGAGGCGACACACACACATCAAGAGCAGTCACGACGAGCCATTGTTGGAGCCAAGAAGCAAGAGGTTTGACGAATTAGTTTTTTGTTTGCAAAATATTTGCAAATTTACATCAGAATCGGAGGAACTGACTGAAATTCTGCACCGTGTGTACGATAACGTCATGGTTGAGATGGAATCATTGAAAGCCAAAAGAAAGGGGACATCTTCTTTATCTCACGAAGACGCCAACTTAGAATCCGTTAACGAGCTTCAAAGCTCTCCAAGGATTCGAACAAGAGGACGTCCAAAAAATAGGCTAGGTTCAAAGTTGGACAAACAGATTGCAAATGCCTCAAAAAAGAAGAACACGAAAGCTTTAAACGAGTTAAACGTCTTTGATGCTGCATCAGTGGTGCGTCCAAATTCCAATCAGTTCAGGCAACCAACAGCAGGGGATAACTTTTTGGGTGTATAA 1455 0.3973 MDDSTLDYQINQRKVDFEFESNEVPEPLSVVDEQLGPKVGMNFKTLEDAAKFYKDYAKAASFFTRVRSTNKKENEIKNQLITCSREEKWKSKISPTEKTNPTAGLNCPARIYIYTLKDVGAWIISKVMLHHSHPCCPTQIEMLKQHRELSMSVHRTIENNEEARMKSTQRSESMHSFFNKFITRNSSLIQFVKQYDNCLGSREQAERESDATHFHTVIPYATKSSIEAQFQDFYTHQKFREVQAQFRGKANCITRLTNSALGYLVYEVGEQLFSSIFNKFVVTYDSVVAEVKCQCLLFESRGILCHHALRVLSFERVLQVSSRYILERWSKKVKRRHTHIKSSHDEPLLEPRSKRFDELVFCLQNICKFTSESEELTEILHRVYDNVMVEMESLKAKRKGTSSLSHEDANLESVNELQSSPRIRTRGRPKNRLGSKLDKQIANASKKKNTKALNELNVFDAASVVRPNSNQFRQPTAGDNFLGV* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0235 484 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 166 394 IPR031052 GO:0006355
Amo08g0235 484 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 29 148 IPR031052 GO:0006355
Amo08g0235 484 PANTHER OS03G0843700 PROTEIN 166 394 - -
Amo08g0235 484 PANTHER OS03G0843700 PROTEIN 29 148 - -
Amo08g0235 484 ProSiteProfiles Zinc finger SWIM-type profile. 280 316 IPR007527 GO:0008270
Amo08g0235 484 MobiDBLite consensus disorder prediction 406 424 - -
Amo08g0235 484 SMART 26again6 291 318 IPR006564 GO:0008270
Amo08g0235 484 Pfam SWIM zinc finger 281 313 IPR007527 GO:0008270
Amo08g0235 484 MobiDBLite consensus disorder prediction 398 433 - -
Amo08g0235 484 Pfam FAR1 DNA-binding domain 51 136 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0235 Amo-Chr8 3888225 3891184 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo08g0235 FAR1 5.9e-09 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0235 - - adu:110280503 517.694