Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0224 ATGCTCGATTCGGTTCTGTTGGCGCTCTTTCTGCCATGCCTTGGCATGAGCGCCATCTTTACAGTCTACATGTGCCTTCTCTGGTACGCCACCACCCGTCACTCGGCTGACAGGCTACCGGTTAAGCCAGTCTCTGAGAAGGGCCTCTCCTCCTCTGACTTGGAAAAGCTACCGAAAATCCCCGGTAAGGAACTGGTCATGGGCTCCGAATGCGCCGTCTGCCTCGATGAGATCGAGAACGAGCAACCGGCTCGCCTGGTTCCTGGTTGCAACCACGGGTTCCATGTTGAATGCGCTGATACCTGGCTCTCCAAGAACCCGCTATGTCCGGTTTGTAGAGCCAAGCTTGACCCTCAGCTTTTCACTCCTCAGAGCCATTGCTGA 384 0.5573 MLDSVLLALFLPCLGMSAIFTVYMCLLWYATTRHSADRLPVKPVSEKGLSSSDLEKLPKIPGKELVMGSECAVCLDEIENEQPARLVPGCNHGFHVECADTWLSKNPLCPVCRAKLDPQLFTPQSHC* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0224 127 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 125 - -
Amo08g0224 127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 119 IPR013083 -
Amo08g0224 127 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 125 - -
Amo08g0224 127 SUPERFAMILY RING/U-box 70 120 - -
Amo08g0224 127 SMART ring_2 71 112 IPR001841 -
Amo08g0224 127 Pfam Ring finger domain 70 113 IPR001841 -
Amo08g0224 127 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0224 Amo-Chr8 3684634 3686807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0224 1 120 C3H Transcription Factor Family AT5G42200 55.906 5.60e-45 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0224 K19037 - gmx:100776003 222.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0224 08 3684634 3686807 Amo17g2099 17 108725154 108726993 hybridization
Amo06g0923 06 12753987 12755349 Amo08g0224 08 3684634 3686807 PCT
Amo08g0224 08 3684634 3686807 Amo06g0923 06 12753987 12755349 PCT