Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0220 ATGGCTAAATCCATGCTTGTTTTTGCTACCTTCCTTTCATTTTGTTTTACTACTAATACTTGCGCCTTCTCACCTTCTGCATGGACCAGCGGCCATGCCACTTTTTATGGAGGCAGCGATGCCTCAGGCACAATGGGAGGTGCTTGTGGATATGGGAACCTGTATTCAGCAGGGTATGGTACTAGAACTGCAGCATTAAGTACTGCTCTGTTCAATGATGGAGCTTCGTGTGGTGAGTGCTACAAAATTATATGTGATTTTCGAGCAGACCCTAGATGGTGTGTCAAAGGAACATCCGTCACCATAACAGCTACCAACTTCTGCCCTCCTAACTTTGCCATGCCCAACAACAATGGAGGCTGGTGTAACCCACCGCTCAAGCATTTTGACATGGCTCAACCTGCATGGGAAAAAATTGGCATTTATAGAGGAGGGATAGTTCCCGTTCTGTTCCAAAGGGTTCCATGCAAGAAGAAGCATGGAGGGGTAAGYTTCACTGTGAATGGAAGAGACTACTTTGAGCTTGTGTTGATAAGCAATGTGGCAGGAGCTGGATCCATCAAAGCTGCGTCGATTAAAGGATCAAAAACTGGATGGATGACTATGTCAAGAAATTGGGGAGCTAATTGGCAATCCAACGCGTATTTGAATGGCCAATCTTTGTCCTTCAGGGTCACAACCACRGACGGCGAAACCAGACTCTTCCAAGATGTGGTTCCACCAAACTGGTCATTTGGACAGAGTTTCTCTAGCAGTGTCCAGTTCTGA 768 0.4609 MAKSMLVFATFLSFCFTTNTCAFSPSAWTSGHATFYGGSDASGTMGGACGYGNLYSAGYGTRTAALSTALFNDGASCGECYKIICDFRADPRWCVKGTSVTITATNFCPPNFAMPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKKHGGVSFTVNGRDYFELVLISNVAGAGSIKAASIKGSKTGWMTMSRNWGANWQSNAYLNGQSLSFRVTTTDGETRLFQDVVPPNWSFGQSFSSSVQF* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0220 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Amo08g0220 255 PANTHER EXPANSIN-A15 3 255 IPR002963 GO:0009664
Amo08g0220 255 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Amo08g0220 255 Gene3D - 162 255 IPR036749 -
Amo08g0220 255 SMART dpbb_1 63 151 IPR007112 -
Amo08g0220 255 Gene3D - 14 157 IPR036908 -
Amo08g0220 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 161 IPR007112 -
Amo08g0220 255 Pfam Lytic transglycolase 63 150 IPR009009 -
Amo08g0220 255 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Amo08g0220 255 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Amo08g0220 255 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Amo08g0220 255 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Amo08g0220 255 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Amo08g0220 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Amo08g0220 255 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Amo08g0220 255 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Amo08g0220 255 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Amo08g0220 255 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Amo08g0220 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Amo08g0220 255 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Amo08g0220 255 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Amo08g0220 255 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Amo08g0220 255 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Amo08g0220 255 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Amo08g0220 255 PANTHER EXPANSIN 3 255 - -
Amo08g0220 255 SUPERFAMILY Barwin-like endoglucanases 27 180 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0220 Amo-Chr8 3625152 3627114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0220 63 255 Expansin Gene Family AT1G20190 81.347 9.93e-118 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0220 - - lang:109341531 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g0845 06 11733992 11735469 Amo08g0220 08 3625152 3627114 PCT
Amo08g0220 08 3625152 3627114 Amo06g0845 06 11733992 11735469 PCT