Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0216 ATGGTTACCACCGCGGCTGATTCTTCCTCTAACCACCACTCTCCCATTGTTGCTGCCGCCACAACCACAAATGTTCCCACCAGTAACCTTAATTTCCCGCGAAAAAACCTACCTTCTCCTTGGGCTCAAGTCGTTCGCGGCACCGACGTTGAGCCACCCTCCGCCGCCGTCCACCAATTGCTGTCGCCATCGTCTTGCTCGTCCTCCTCTGCAACCGACCAACTGCTGCAATCCTCCGATCCCTCGCCGCCGTTTGAAAGTTCTAATTCCGATGGCGCCACCGCGGCTGCAGCAAGTGTAGATAGCTTGAATGCTGATAAGGCGGGCAATAATGCGGGTGGACCTAAGAAACCCGCGTGGAGGAGGCAATCAAACGGCGTAGAAGATGCTTGTGCTGTGAAGGTAATGGACGCTGTTTCTTGGCCCGCTTTGTCAGATTCCACCAAGCCTACCACTAAGTTGTCACCTGAGGCCTCATCTTCCAAGACTGCTTTTGATGGATCGCAACCTACTCCTCGGGGTCCGGTTGCTTTACACTCTCCTCGAAAGCAAGGAGTTGGCAATGCAAGACCTAATCCAGCATCAGTTTATGGTGGGGCTGGTAGACAAAGACTAATAATAAAGCGTGGAGGCGGCAATGTCAATGGCAATGGCAATGGTGCTGGCCCTGTTCAAGCAATGAGGAGCTTCTCTGCTCCTCCTCCTCCACCACCACCACCCCCTTTTCCTGTAATTCAGATGCCTCCAACTAGCTTTCCTAATGGGGTAGCAGGGGTGGCAGCCCTTGTTCCAAGAGATCCTTACAGGAATAGTAGCTGGGGTGCAAGGTCTCCGGTTGGGAGTTTCGTGCCACCAATGATTGAACATAGGAGTCCATCTCGCAGGGGAACTTTTGGGCATCATCCACGTACTGGTGGTTCTTTTCATAATTATGGCATCCGGAGTGATCAGGATCGCCAAAATTATGCACATACCAGAGATCCTCAGTTACACCCGCCAAGGATGTTTCCAACACGAGCAATGGGCCCGCTTCCACCTAATACCCCTTCATTTGCAGGTCCTCAGCCTATACCACCGTTTGTAAACCATGCTGGTTTTCCTGAATATTGTTATTTTCCAACGTTACAATTTGAACCATTTGGGGGTATGCCATTCTTTACCCATGGACCTCCTTCTGCAATGTTCTATCCTGTTGCAGAAACTTCTCTTGTCAATGCAATAGTCAAGCAAATTGATTATTATTTTAGTGATACTAATTTAGTGAAAGATGAGTTTTTACGTTCTAACATGGATGATCAGGGCTTTGTTCCAATTAGATTGGTTGCAAGCTTTCGTCGTGTTAAAAGTTTGACAAGCAATGTTGAGTTGATTATAGATTCATTGAGAATATCTACTATTATAGAAGTGAAGGGTGATAAGTTGAGAAGGCGGAAGGATTGGATGAAGTGGCTGCCCACTCCCTTGAATCGGGCAGATTTTGGTTCAACATCTATGGGTGGATCAAGTTATAATAACTCGGCAACTGATTTTGAAAAGATCACTTTGGATAAGACCACTGTGGATAGACTTAATTCCAATTCTATCACAACGAGTGATGGCAATGTGAATGAAGAGTCCTCTAGTTCGTATCAATTCCATAATCATGATGCTATGCTTAGCAGCAATTAA 1668 0.4724 MVTTAADSSSNHHSPIVAAATTTNVPTSNLNFPRKNLPSPWAQVVRGTDVEPPSAAVHQLLSPSSCSSSSATDQLLQSSDPSPPFESSNSDGATAAAASVDSLNADKAGNNAGGPKKPAWRRQSNGVEDACAVKVMDAVSWPALSDSTKPTTKLSPEASSSKTAFDGSQPTPRGPVALHSPRKQGVGNARPNPASVYGGAGRQRLIIKRGGGNVNGNGNGAGPVQAMRSFSAPPPPPPPPPFPVIQMPPTSFPNGVAGVAALVPRDPYRNSSWGARSPVGSFVPPMIEHRSPSRRGTFGHHPRTGGSFHNYGIRSDQDRQNYAHTRDPQLHPPRMFPTRAMGPLPPNTPSFAGPQPIPPFVNHAGFPEYCYFPTLQFEPFGGMPFFTHGPPSAMFYPVAETSLVNAIVKQIDYYFSDTNLVKDEFLRSNMDDQGFVPIRLVASFRRVKSLTSNVELIIDSLRISTIIEVKGDKLRRRKDWMKWLPTPLNRADFGSTSMGGSSYNNSATDFEKITLDKTTVDRLNSNSITTSDGNVNEESSSSYQFHNHDAMLSSN* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0216 555 MobiDBLite consensus disorder prediction 525 555 - -
Amo08g0216 555 PRINTS Lupus La protein signature 465 478 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Amo08g0216 555 PRINTS Lupus La protein signature 410 427 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Amo08g0216 555 PANTHER LA-RELATED PROTEIN 1B 53 543 - -
Amo08g0216 555 CDD LAM 405 478 - -
Amo08g0216 555 MobiDBLite consensus disorder prediction 144 239 - -
Amo08g0216 555 MobiDBLite consensus disorder prediction 292 314 - -
Amo08g0216 555 PANTHER LUPUS LA PROTEIN-RELATED 53 543 IPR045180 -
Amo08g0216 555 SMART la 401 479 IPR006630 -
Amo08g0216 555 MobiDBLite consensus disorder prediction 144 168 - -
Amo08g0216 555 MobiDBLite consensus disorder prediction 1 36 - -
Amo08g0216 555 Gene3D - 395 484 IPR036388 -
Amo08g0216 555 SUPERFAMILY "Winged helix" DNA-binding domain 394 485 IPR036390 -
Amo08g0216 555 Pfam La domain 407 462 IPR006630 -
Amo08g0216 555 ProSiteProfiles La-type HTH domain profile. 397 486 IPR006630 -
Amo08g0216 555 MobiDBLite consensus disorder prediction 58 97 - -
Amo08g0216 555 MobiDBLite consensus disorder prediction 1 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0216 Amo-Chr8 3598269 3600870 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0216 K18757 - gmx:100775279 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0216 08 3598269 3600870 Amo17g2105 17 108949516 108952097 hybridization
Amo06g0921 06 12676775 12680277 Amo08g0216 08 3598269 3600870 PCT
Amo08g0216 08 3598269 3600870 Amo06g0921 06 12676775 12680277 PCT