Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0183 ATGGAAATAGAAGAGCAAGGAGGAGGTATGACGTCATCAAGGTTCAGGCGCATCTGTGTATACTGCGGAAGCAGCCCCGGCAAGAATCCCAGCTACCAACTCGCCGCAATTCAGCTCGGCCAACAACTGGTGGAAAGGAACATTGACTTGGTATATGGAGGAGGAAGCATTGGCTTGATGGGTCTAATCTCCCAAGTTGTCTATGATGGGGGACGCCACGTGTTAGGAGTGATTCCAAAGACGCTCATGCCAAGAGAGTTAACTGGAGAGACAGTGGGGGAAGTAAGAGCAGTTTCAGGAATGCACCAACGCAAGGCTGAAATGGCCAGACAAGCTGACGCTTTTATTGCTTTGCCAGGTGGATACGGAACCCTCGAAGAGCTTTTGGAAATCATCACCTGGGCTCAACTAGGAATCCATGACAAACCGGTGGGGTTGTTGAACGTGGATGGCTACTATAACTCGTTGCTGGCATTCATGGATAAAGCTGTGGACGAAGGTTTTGTAACACCAGCTGCCCGTCACATTATTGTCTCTGCCCAAACTGCCCAAGACCTCATGTGCAAGCTTGAGGAATATGTCCCCAAGCACTGTGGTGTGGCCCCAAAACTAAGTTGGGAGATGGAGCAACACTTAGTTAATAACGCTGCAAAGTCAGATATTTCCCGTTGA 672 0.494 MEIEEQGGGMTSSRFRRICVYCGSSPGKNPSYQLAAIQLGQQLVERNIDLVYGGGSIGLMGLISQVVYDGGRHVLGVIPKTLMPRELTGETVGEVRAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEIITWAQLGIHDKPVGLLNVDGYYNSLLAFMDKAVDEGFVTPAARHIIVSAQTAQDLMCKLEEYVPKHCGVAPKLSWEMEQHLVNNAAKSDISR* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0183 223 PANTHER LOG FAMILY PROTEIN YJL055W 10 211 - -
Amo08g0183 223 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 10 211 - -
Amo08g0183 223 SUPERFAMILY MCP/YpsA-like 14 193 - -
Amo08g0183 223 TIGRFAM TIGR00730: TIGR00730 family protein 17 193 IPR005269 GO:0009691|GO:0016787
Amo08g0183 223 Pfam Possible lysine decarboxylase 60 189 IPR031100 -
Amo08g0183 223 Gene3D - 6 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0183 Amo-Chr8 3150158 3152438 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0183 K22522 - gmx:100782787 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0183 08 3150158 3152438 Amo17g2154 17 111083072 111085268 hybridization
Amo16g3992 16 151936215 151943869 Amo08g0183 08 3150158 3152438 PCT
Amo06g0880 06 12011858 12015748 Amo08g0183 08 3150158 3152438 PCT
Amo08g0183 08 3150158 3152438 Amo16g3992 16 151936215 151943869 PCT
Amo08g0183 08 3150158 3152438 Amo06g0880 06 12011858 12015748 PCT