Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0180 ATGGCACTGTGCTTGGAAAGCCGCCAAGTCAAGTCTCATGCTGTAACAATGGACCGACGGTGGCCGTGGAAGAAAAAATCATCTGGCAAGGCTGTGGACAAACCATTGGAATCTGGCGATGCTTCTGATCAGGCCAATCAGGACAGGAAAGAAGTGAACTACGTCCAAATCTCTGTGGAATCATATTCACATCTAACTGGTTTAGAAGATCAAGTAAAAACATATGAGGGAAAAGTTCGAACACTTGAGAATGAGATCAAGGAGATGAATGAAAAGCTCTCAGCAGCAAACTCTGATATCAATACCAAGGAAACTATTGTAAAACAGCATGCTAAAGTGGCTGAAGAAGCTGTCTTAGGTTGGGAGAAGGCTGAAGCAGAAGCTTTGGCGTTGAAGAACCATTTAGAATCTGTCACTCTTTCCAAACTCACGGCCGAGGATCGCGCATCACATTTAGATGGGGCTCTTAAGGAATGTATGCGACAGATAAGAAATCTGAAGGAAGAACATGAACAGAAAATACAAGAAGTTGCTCTGGCGAAAACCAAGCAATTAGACAAGATTAAGGGGGAACTGGAGGCAAAGATAGTTAACTTTGAAGAGAAACTTGTCAGGGCTAGTGCTGAAAATGGAGCACTCTCAATGTCCTTGCAGGAGCGCTCCAACATGCTGATCAAAGTGAGCCAAGAAAAAGCACATGCTGAGGCTGAAATTGAGCATCTTAAGAGCAACATAGAATCATGCGAGAGAGAGATTAATTCACTTAAATATGAACTCCATGTTGTTTCGAAGGAACTTGAAATTCGCAACGAAGAGAAGAACATGAGTATTAGATCAGCAGAAGCTGCTAACAAGCAGCATGCAGAGGGTGTCAAGAAAATTGCTAAGTTAGAGGCTGAGTGCCAAAGGTTACGTGGTCTAGTGCGGAAGAAGTTACCTGGCCCTGCTGCACTCGCACAGATGAAGTTAGAAGTTGAAGGCCTTGGCCATGATTACAGAGAGAGTCGAATAAGGAAGTCTCCCGTGAAACCTGCTGCTCCGTATTTGTCCCCATTGACTGAGTTCTCCTTAGAGAATGTACAAAAATTCCAGAAAGAGAATGAATTTCTCWCGGGGCGTTTATTGGCAATGGAAGAAGAAACAAAGATGCTGAAAGAAGYTTTGGCTAAACGTAACAGTGAATTGCAGGCATCAAGGAGTATGTGTGCTAAAACACTAAGCAAACTTCAGAGTTGGGAAACACAGCATCAGCAGAAAGGATCCCCAGAATCCATCACCCAGATGATCCATGCAAGCAATGCTCCAAGCTTGGTCTCCATGTCTGAAGATGGAAATGATGATACAGGAAGCTGTGCTGACTCTTGGTCTACGGCAATAGTCTCCGGGCTGTCCCAATTCCCTAAAGAAAAAAGCACTGAAAAATCAATCAAATCTGAAGCCACTAAGAAGTTGGAACTAATGGATGACTTTCTAGAAGTGGAGAAGTTAGCTCGTTTGTCAAATGACACCAATTTAGATGAGGTATCTTGCAAAGATGTTCCATCTGAAGAGAACAATGATATAAAGAGCAACGACTTGCTACTATCAGAGCTTAGGTCAAGAATATTATCAATTTTTGAGTTCACTGCTAATGATGCAGACGTAGGGAAGATCATACAAGATATTAAGCACATAATAGAAACGGACAAAGAAGCCACTTCATCCCACTATTCCAACGAATATGTGCAGATAAACTCAGATTTGGAAGCTGCAATTTCTGATATTCACGACTTTGTGTTGTTACTTGGCAAAGAAGCAATATCATTTCATGACATATCGTCCGATGGAAGTGAAATGAGTAAAAAGATTGAGGAATTCTCTTTTACTTACGATAAACTTCTATGYAACAATGCAAGTTTGGTCCAGTTTGTTCTTGGCCTGTCCAGTGTTTTAACTAAAGCAAGTGAGTTCAGATTTAATGTYCTTGGCTACAAGGGTACAGAAGCTGAAAATAACWSTCCTGATTGTATAGATAAGATTGCTTTGCCTGAAAATAAGCTAGCTCAAGACAATGCATCTGGAAATAGATATCAAAATGGTTCTTCCCTTATTCTGAATCCTTGTTCTGATCCTGAGGTTCCTGATGATGGAAATGTGGTTTCTACATCGAAGAGCCTCTCCGATGAATATGAAGAATTGAAACAGGAGAATCGAAAACTAGTAACTGATCTGTCACAGTGTGCTCAAAATCTACAAATGACAAAGTCTCAATTGCTAGAGACTGAGCAACTTCTAGCAGAAGTAAAATCAGAATTGGCTTCTGCTATAAAATCAAACAGCTTGGCTGAGACGCAGCTGAAGTGCATGGCAGAGTCATACAAGTCACTTGAAGCACGTGCCCAAGAGCTTGTAACCAAGCTGAATCGTCTTCAAATTGAGACAGAAACCCTGGAGAATAAGCTTCAAGAGGAAAAGAAGGCTCACGAAACCGTATTGGCCAAAAGCAAGGTGCTGGAGGAGCAACTACAGAGGATTGAGAGTTCAGCAGCTGATAGTCGCATGAAGTCTACACAGGAGAAAGATTTGGCAACGGCGGCGGAGAAGCTAGCTGAGTGTCAGGAAACTATATTTCTTCTTGAGAAGCAGTTAAATGCTCTGCATCTAGAAAATCCAAAGCCAGAAAGTGGTAGTTCTAAATTGGTGGAAAGAGTGGGTTCTGGTTCACCCTTGCACTTCTCCAACAGCTTATCTAGCCCAGACAACGAGTCGAGCCTTCTAGCGAGATCCCCGGTGCGGCATCACAAAGCAAGACACAGGCCAACCAAATCAGCCTCCTCACCGGCGGCTTCTTCCACGCCTACACCGGAGAAGCATGCGCGAGGCTTCAGTAGATTCTTCTCATCAAAAGGAAAACCTTCTCGTTGA 2904 0.4263 MALCLESRQVKSHAVTMDRRWPWKKKSSGKAVDKPLESGDASDQANQDRKEVNYVQISVESYSHLTGLEDQVKTYEGKVRTLENEIKEMNEKLSAANSDINTKETIVKQHAKVAEEAVLGWEKAEAEALALKNHLESVTLSKLTAEDRASHLDGALKECMRQIRNLKEEHEQKIQEVALAKTKQLDKIKGELEAKIVNFEEKLVRASAENGALSMSLQERSNMLIKVSQEKAHAEAEIEHLKSNIESCEREINSLKYELHVVSKELEIRNEEKNMSIRSAEAANKQHAEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKLEVEGLGHDYRESRIRKSPVKPAAPYLSPLTEFSLENVQKFQKENEFLXGRLLAMEEETKMLKEXLAKRNSELQASRSMCAKTLSKLQSWETQHQQKGSPESITQMIHASNAPSLVSMSEDGNDDTGSCADSWSTAIVSGLSQFPKEKSTEKSIKSEATKKLELMDDFLEVEKLARLSNDTNLDEVSCKDVPSEENNDIKSNDLLLSELRSRILSIFEFTANDADVGKIIQDIKHIIETDKEATSSHYSNEYVQINSDLEAAISDIHDFVLLLGKEAISFHDISSDGSEMSKKIEEFSFTYDKLLCNNASLVQFVLGLSSVLTKASEFRFNVLGYKGTEAENNXPDCIDKIALPENKLAQDNASGNRYQNGSSLILNPCSDPEVPDDGNVVSTSKSLSDEYEELKQENRKLVTDLSQCAQNLQMTKSQLLETEQLLAEVKSELASAIKSNSLAETQLKCMAESYKSLEARAQELVTKLNRLQIETETLENKLQEEKKAHETVLAKSKVLEEQLQRIESSAADSRMKSTQEKDLATAAEKLAECQETIFLLEKQLNALHLENPKPESGSSKLVERVGSGSPLHFSNSLSSPDNESSLLARSPVRHHKARHRPTKSASSPAASSTPTPEKHARGFSRFFSSKGKPSR* 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0180 967 SUPERFAMILY Tropomyosin 713 880 - -
Amo08g0180 967 MobiDBLite consensus disorder prediction 901 918 - -
Amo08g0180 967 PANTHER FILAMENT-PLANT-LIKE PROTEIN 17 505 - -
Amo08g0180 967 PANTHER FILAMENT-PLANT-LIKE PROTEIN 515 563 - -
Amo08g0180 967 Coils Coil 149 183 - -
Amo08g0180 967 Coils Coil 716 764 - -
Amo08g0180 967 PANTHER FILAMENT-PLANT-LIKE PROTEIN 566 882 - -
Amo08g0180 967 PANTHER FILAMENT-PLANT-LIKE PROTEIN 887 964 - -
Amo08g0180 967 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 17 505 - -
Amo08g0180 967 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 515 563 - -
Amo08g0180 967 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 887 964 - -
Amo08g0180 967 Coils Coil 360 370 - -
Amo08g0180 967 Coils Coil 65 106 - -
Amo08g0180 967 MobiDBLite consensus disorder prediction 882 967 - -
Amo08g0180 967 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 566 882 - -
Amo08g0180 967 MobiDBLite consensus disorder prediction 936 950 - -
Amo08g0180 967 Coils Coil 848 868 - -
Amo08g0180 967 MobiDBLite consensus disorder prediction 21 47 - -
Amo08g0180 967 Coils Coil 372 380 - -
Amo08g0180 967 Coils Coil 189 209 - -
Amo08g0180 967 Coils Coil 224 300 - -
Amo08g0180 967 MobiDBLite consensus disorder prediction 21 49 - -
Amo08g0180 967 Coils Coil 779 827 - -
Amo08g0180 967 Pfam Filament-like plant protein, long coiled-coil 103 569 IPR008587 -
Amo08g0180 967 Pfam Filament-like plant protein, long coiled-coil 568 880 IPR008587 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0180 Amo-Chr8 3112125 3117027 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0180 - - adu:107460166 1745.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g0884 06 12061684 12067755 Amo08g0180 08 3112125 3117027 PCT
Amo08g0180 08 3112125 3117027 Amo06g0884 06 12061684 12067755 PCT