Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0176 ATGTATAACTTAACTAGCACGCCTTCTGGCGAGGTATTGCTGCCTCTGTTCTTCACTCATGATTTATCTTTGTCGCCTGGCATAGCAGCAGGGGCATGTTGGTACTTGTTGGGGGTGCAGAGGGCAGCAAAGTGCCTAAAATACTTATCTTGCAAGCAGCATATAAATTATGGAAGCAATGGGATGGTGAAGGAGAAGCCAAGGTTGGCTTGGGCAGCAAATAGGGAAGCAAGGTCAACATGCCTTGATGGCCTTGACAACTATGACTATGGTGCTTATCAATGGACCGTCCAGCTTGTCACCAATGATAGCCGCTTGGAAAATATCCTCTTTCCTATCTTATGGGGCCTCATGACTCTCAGGTTCGATCAATGTTCAATCTCCCTACTATCATTAAAAGGAGTCAAGGACGCGGGATATGAGAAGATGACTATTGTACAGGCGGCAACTCTTCCTGTAAGGATGTCCTTGCCAAGGCTAGAACAGGCACTGGGAAAACAGTTGCCTTTTTGCTTCCATCAATTGAAGTTGTTGCAAATTCACCACCAACTGAACGTGATCATAGGCGAGCTTGCAAGTCAAGCGGCTACAGAAGCTGCTGAATTGCTTAAGTATCATCCTACCATTGGTGTTCAGATCCTTGTTGCTACACTTGGAAGGCTTAGAGATCATGTGGAGAATACTGCTGGCTTTGCAACTCAGCTGATGGGTGTGAAAGTGTTGGTGCTCGATGAAGCTGATCATTTACTGGACATGGGATTTCAGAAAGATATTTTGAATACAGAGTTTATATTTTGA 798 0.4486 MYNLTSTPSGEVLLPLFFTHDLSLSPGIAAGACWYLLGVQRAAKCLKYLSCKQHINYGSNGMVKEKPRLAWAANREARSTCLDGLDNYDYGAYQWTVQLVTNDSRLENILFPILWGLMTLRFDQCSISLLSLKGVKDAGYEKMTIVQAATLPVRMSLPRLEQALGKQLPFCFHQLKLLQIHHQLNVIIGELASQAATEAAELLKYHPTIGVQILVATLGRLRDHVENTAGFATQLMGVKVLVLDEADHLLDMGFQKDILNTEFIF* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0176 265 PANTHER RNA HELICASE 90 213 - -
Amo08g0176 265 Gene3D - 118 261 IPR027417 -
Amo08g0176 265 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN-RELATED 212 258 - -
Amo08g0176 265 PANTHER RNA HELICASE 212 258 - -
Amo08g0176 265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 259 IPR027417 -
Amo08g0176 265 Pfam DEAD/DEAH box helicase 181 258 IPR011545 GO:0003676|GO:0005524
Amo08g0176 265 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 120 148 IPR014014 GO:0003724
Amo08g0176 265 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN-RELATED 90 213 - -
Amo08g0176 265 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 190 265 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0176 Amo-Chr8 3029832 3032194 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0176 29 120 Ion Channels AT5G54250 62.500 2.93e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0176 - - ahf:114924390 253.832