Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0175 ATGAAGGAACAATCAGGCACGCCCCTTGCATCGTTGCCTCGGCCTCAACCTCAGGTGGAGTGGAATGAGCTTGGATATAGTTCATGGGACACTCAGACTTCTCAAAATCCTAAGAGGCCATTAGAAGCTACATTGTTGGAGAACACTTTCCTAACAAGTCCCTGCATGCCACATTATGATAATGGAACTGTTGAAATGAATATTCATTTGAAACCTCAACTTGGAAACAACACTAGATCCCGTTTATGGATTCCTCAGCAAGAAGAATCTGTTGCTAAGAGAGCTCTCTTACAACAGATGAACGCAACGCTGCCTAAGGTTAACCGAAAAGGTCATCTTGCAGGTTCAGGTTCAGGTTCAGTTAGCATAATACCACAGAATGATCAATATTTTCTAACTGAACTAAATCAACATTCTTTTGAAATTGATAATCCTTTGTCTCCTGACATTTCTAAATTAGAATCTGAGGTGTTAAGTGATCCTGTTAACCCTCAAAGTCAAAATTGGAGTTCATCAGTGGTTGGTATTCCCCAATCTGATTCTGCCACTGTGAATGGCCTAATTCCTCAGCAAGATACAGATGAATGGATGGTGCATTCTTCTTGCCAACAAGGATTGCAAGAACATCGTATATTAAGATCTGAAGCAGTTTTGAGGAATCTCTCAGCTAAGAGCAGCAATCCTGGTGAAATTTGGGGTAACACCAGTGTTGATGTTAGCAGTGCAAGTGCCACCATGGTTGAGCCTTCGAATTCAAGTGCCATTTTGGATGAATTTTGCACACTTCAGGACAAGGATTTTCAGAAACTATCAGATTGCATCGTGAGCAACTTCAGTATGAGCCAGGATGTCCAGTCACAGATAACATCAGCAAGTCTAGCCGAGTCCCATGTGTTTTCTGTGCAAGACCTCGCCGTCGACGCAGGTGGTGCATCTTCAAGCCATGCTGATTTTAATGAATGCAGCTTTCTGCAAAATAATTCAAGGCCGCGAGTAGCTTCAAAAGCTCCACCCAGGCGTACCTATACTAAGGTACAAAGGGCTGGTTCTGTAGGAAGATCAATTGATGTCACTGCTTTCAAGAACTATGAGGAACTGATACATGCAATTGAATCCATGTTCGGACTCGAGGGTCTGCTTAATGACGACACCAGAGGCAGAGATTCAGAATGGAAGTTAGTATATGTTGATTAYGAGAATGATGTTCTACTTGTTGGGGATGATCCTTGGGGGGAATTTGTGAACTGCGTCCGCTGCATCAGAATTTTGTCACCTACAGAGCTTAAGAAGATGAGCAAAGAGGGAATGCAGCTTCTAAATAGTGGTGCATTGCAACGGATCAATGGTCACATGCACTAA 1359 0.4283 MKEQSGTPLASLPRPQPQVEWNELGYSSWDTQTSQNPKRPLEATLLENTFLTSPCMPHYDNGTVEMNIHLKPQLGNNTRSRLWIPQQEESVAKRALLQQMNATLPKVNRKGHLAGSGSGSVSIIPQNDQYFLTELNQHSFEIDNPLSPDISKLESEVLSDPVNPQSQNWSSSVVGIPQSDSATVNGLIPQQDTDEWMVHSSCQQGLQEHRILRSEAVLRNLSAKSSNPGEIWGNTSVDVSSASATMVEPSNSSAILDEFCTLQDKDFQKLSDCIVSNFSMSQDVQSQITSASLAESHVFSVQDLAVDAGGASSSHADFNECSFLQNNSRPRVASKAPPRRTYTKVQRAGSVGRSIDVTAFKNYEELIHAIESMFGLEGLLNDDTRGRDSEWKLVYVDYENDVLLVGDDPWGEFVNCVRCIRILSPTELKKMSKEGMQLLNSGALQRINGHMH* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0175 452 Gene3D - 337 432 - -
Amo08g0175 452 ProSiteProfiles PB1 domain profile. 340 427 IPR000270 GO:0005515
Amo08g0175 452 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 120 446 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo08g0175 452 PANTHER AUXIN RESPONSE FACTOR 5 120 446 - -
Amo08g0175 452 Pfam AUX/IAA family 335 429 IPR033389 -
Amo08g0175 452 SUPERFAMILY CAD & PB1 domains 353 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0175 Amo-Chr8 3022040 3023860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0175 241 444 B3 DNA Binding Superfamily AT1G19850 60.000 3.12e-71 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo08g0175 AUX_IAA 2.8e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0175 K14486 - adu:107460158 892.878