Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0154 ATGGCCGGAGAGAATAGCAAGAACGACGTCGCAGTGTATCCTCCCAAAACAAGACGGTTGTGGCCTTCTCTTCTCCGTTGGATTCCGACTTCAACGGAACACATCATCGCTGCCGAGAAGCGACTCCTTTCTCTCGTCAAGACTCCCTWTGTTCAAGAACATGTTAATATTGGCTCWGGTCCTCCTGGCTCTAAAGTTAGATGGTTCCGTTCATCAAGCGACGAGCCACGGTTTCTTAACACTATTACGTTTGATAGTAAAGATGACTCCCCTACGCTTGTAATGGTCCATGGATATGCAGCTTCCCAGGGTTTCTTTTTTCGCAATTTCGATGCTCTTGCAAATCATTTYAGAGTCATTGCTGTTGATCAACTTGGCTGGGGTGGATCAAGCAGACCTGATTTTACATGTAGGAGCACTGAAGAAACTGAGACATGGTTCATAGATTCTTTTGAAGAATGGAGGAAAGCCAAAAATCTGAGCAATTTTATACTGCTTGGACATTCTTTTGGTGGTTATGTTGCTGCCAAATATGCACTCAAGCACCCTGAGCATGTAAAGCAATTGATTCTGGTGGGACCCGCTGGATTTACATCAGAATCAGATCCAAAGGCTGAGTTCATTATGAAGTTTCGAGCAACGTGGAAAGGAGCAGTTATGAACCATCTATGGGAATCTAATTTTACGCCTCTAAAAATTGTCAGAGGTTTAGGTCCTTGGGGTCCTAATATGGTCCGCCGATATACAGATATGAGGTTTGGTACGCGCGCACAAGGGGAAATACTGACTGAAGAGGAATCAAGATTGCTCACAGATTATATGTACCATGTATCAGCGGCCAAAGCTAGTGGGGAGCTGTGCTTAAAGTACATTTTTAAATTTGGTGCATTTCCTAGGATCCCCCTCTTTCACAGTGCCTCAGAGTGGAAAGTACCCACCACATTCATATATGGTTTTGACGACTGGATGAATTATGAAGGGGCCCAAGAAGCTCGCAAGGATATGAAGGTTCCATGTGAAATCATTAGGGTCCCCCAGGGAGGGCACTTTGTGTTCATTGACAACCCAAGTGGTTTCCATTCTGCTGTGCTTTATGCTTGTCGAAAATTTCTTAGACCTAATACAGACAATGAATCTCTTCCTGAAGGGCTAACCTCTGCATAG 1164 0.4433 MAGENSKNDVAVYPPKTRRLWPSLLRWIPTSTEHIIAAEKRLLSLVKTPXVQEHVNIGSGPPGSKVRWFRSSSDEPRFLNTITFDSKDDSPTLVMVHGYAASQGFFFRNFDALANHFRVIAVDQLGWGGSSRPDFTCRSTEETETWFIDSFEEWRKAKNLSNFILLGHSFGGYVAAKYALKHPEHVKQLILVGPAGFTSESDPKAEFIMKFRATWKGAVMNHLWESNFTPLKIVRGLGPWGPNMVRRYTDMRFGTRAQGEILTEEESRLLTDYMYHVSAAKASGELCLKYIFKFGAFPRIPLFHSASEWKVPTTFIYGFDDWMNYEGAQEARKDMKVPCEIIRVPQGGHFVFIDNPSGFHSAVLYACRKFLRPNTDNESLPEGLTSA* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0154 387 Pfam alpha/beta hydrolase fold 91 356 IPR000073 -
Amo08g0154 387 Gene3D alpha/beta hydrolase 78 368 IPR029058 -
Amo08g0154 387 PANTHER RE40534P-RELATED 19 377 - -
Amo08g0154 387 PRINTS Epoxide hydrolase signature 344 366 IPR000639 GO:0003824
Amo08g0154 387 PRINTS Epoxide hydrolase signature 179 192 IPR000639 GO:0003824
Amo08g0154 387 PRINTS Epoxide hydrolase signature 116 131 IPR000639 GO:0003824
Amo08g0154 387 PRINTS Epoxide hydrolase signature 311 327 IPR000639 GO:0003824
Amo08g0154 387 SUPERFAMILY alpha/beta-Hydrolases 82 364 IPR029058 -
Amo08g0154 387 PANTHER BNAA01G13630D PROTEIN 19 377 - -
Amo08g0154 387 PRINTS Alpha/beta hydrolase fold signature 116 131 IPR000073 -
Amo08g0154 387 PRINTS Alpha/beta hydrolase fold signature 165 178 IPR000073 -
Amo08g0154 387 PRINTS Alpha/beta hydrolase fold signature 179 192 IPR000073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0154 Amo-Chr8 2771592 2775206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0154 71 198 Acyl Lipid Metabolism Gene Families AT1G64670 30.657 6.57e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0154 - - nnu:104607503 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g0725 06 10309480 10313474 Amo08g0154 08 2771592 2775206 PCT
Amo08g0154 08 2771592 2775206 Amo06g0725 06 10309480 10313474 PCT