Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0145 ATGCTGAAATCGGGGACGATGGGAATGGAGGAGAGGAAACAGGCGAAGAAACCAGCACAAGCCAGCTCCAGAAAGGGTTGTATGAGAGGCAAAGGTGGCCCTGAGAATGCGAGCTGCACCTATAAGGGTGTTAGGCAGAGAACTTGGGGCAAATGGGTTGCTGAGATCCGTGAACCCAATCGTGGTGCTCGTCTCTGGCTTGGTACCTTTGAGACCTCTCATGAAGCTGCTCTTGCTTATGATACTGCTGCTCGTAAGCTCTATGGCCCTGATGCTAAGCTCAATCTCCCTCTTCATCACCATCACCATTCTTCTTCTAGTAATTCCCCCCAAATTCATCGCAACCACCCTCTTATTAATAATATTATTACTACTCCACCACCAGCAACACCACTTATTAGTTCTTCTTGTAATAATAGCGTCAACACAGCGTCGTCCATGGTGGCCTCTCTTCATCAGCAAGTTAGGCCACCAATATACCGCAGTGATTCTTCATCCATTGTGTCTTCTTCCCTTCCATTGGACAGCACCAACAATAAGGAGGAGGATGTTCTTCGACCGTTCTGGGGATCAGTGAATGATTGTTTGCCTGTGTTTGATGAATCAATCTGGACAGAAGCAGCCATGTCCCTTGATTTCCCTGTAATTGCTGCTGCAGAGGCTGCCACTGGAATTTACCCAAACGCCAACTTGGCAGATGTTGGTGTTTGGGACACCCCATGGTGCATGTAA 732 0.4809 MLKSGTMGMEERKQAKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDTAARKLYGPDAKLNLPLHHHHHSSSSNSPQIHRNHPLINNIITTPPPATPLISSSCNNSVNTASSMVASLHQQVRPPIYRSDSSSIVSSSLPLDSTNNKEEDVLRPFWGSVNDCLPVFDESIWTEAAMSLDFPVIAAAEAATGIYPNANLADVGVWDTPWCM* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0145 243 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 15 220 - -
Amo08g0145 243 Pfam AP2 domain 40 89 IPR001471 GO:0003700|GO:0006355
Amo08g0145 243 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Amo08g0145 243 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Amo08g0145 243 SUPERFAMILY DNA-binding domain 40 98 IPR016177 GO:0003677
Amo08g0145 243 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Amo08g0145 243 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 15 220 - -
Amo08g0145 243 Gene3D AP2/ERF domain 40 99 IPR036955 GO:0003700|GO:0006355
Amo08g0145 243 MobiDBLite consensus disorder prediction 1 39 - -
Amo08g0145 243 CDD AP2 39 92 IPR001471 GO:0003700|GO:0006355
Amo08g0145 243 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0145 Amo-Chr8 2585214 2585945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0145 14 239 AP2-EREBP Transcription Factor Family AT1G75490 44.493 8.46e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo08g0145 AP2 2.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0145 - - gmx:100797850 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g0716 06 10133552 10135853 Amo08g0145 08 2585214 2585945 PCT
Amo08g0145 08 2585214 2585945 Amo06g0716 06 10133552 10135853 PCT