Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0118 ATGAAAACCCGTCGGCCAGATTCCGTCATCTCCTTCTTCAAAGCCCACGGTTTCTCACTCTCCCAAATCACCACCATCATGCGCAGGATTCCCGTGTTCCTCACATGCGACCCCACCAATGCAATCTTGTCAAAGTTTCAATTTTTATCATCCAAAGGTGCTTCTCCCTCTGACATTGTACTCATGACCACAAGGAGTCCCCGCTTCCTGCTTCGAAGCCTTGACCATATAGTATCCTTGTACGAATTGGTAAGGAGGTTCTGTCCCTCTGATCTTAAGGCAATTGCTTATATAACTGCATGGCCATCATCCATTGCTGATGTTCGTCTGGCTCAAAATGTGAAATTGCTGCTTGATGAAGGGTTGACCAATGCCAACATTCACCATTTGCTTAGAACTAGGCCTTCTGTGCTGTCCTCTGCTGATTTGAAGAAAACAGTTGAGGAAGTGAAGCAATTGGGGTTTGATCCTTCACACTCTTATTTCAGTGTGGTGTTGCTGACCAAAAGGGCCATAACTAAGTCCAAATGGGAGGCTAAAGTTGATGTCCTTAAGAAATGGGGCTGGTCCGAACAAGATTTTTCGGAGGCCTTTAGGAGGCACCCCAATTTTATGCTACGTTCCGAGGACAAACTCAATGCAGTGATGAGCTTTTGGATCAGTAATCTCGGCTGGGATTCTTCGGCGCTTCGCATTAGACCGATGCTTTTTGGATGCAGTTTGGAGAAGAGGCTTATTCCTAGAGCTAAGGTTGTCAAATATCTTCTCTCCAATGGTTTGATGAAGAAGAATGCTAGCATAATCACACCATTTTCTTTGACTGAGGAGCTGTTCCTCAAGAAGTGTGTCACATGTTTTGAGGAGAAAGATCGGTCTCGCCTATTAACACTATATCAAGGAGGATGTTTTGTTTCAAATTTGCAGCTTGACATCTTCATCATCATGTCGAAGGGCATCACCAAGCTCAAGAACATTCTAGAAGGCTTGCCTGAACCTCTCTTCAGCTCCAAGGACTACATGATGCTTTACATCCTCCTCATGACTATTCCCAACAACTCTATGACAAGTACAAGGAGGTATTTGAAGAGTACATCCAATCAACGAGAGAAGCATGATGAATTTATGTTGAGAGAACTTGTAAAGAGGTGGGCAAACCATAAAATTATGGTTAGGTGGCTTTGTTGTTTCTTTCACTATTTGGATCGCTACTTTGTTGCCCGGAGGTCACTCCCACCCCTTAATGAAGTTGGGTTAACTTGCTTCCGTGATCGGCAGATTGATCGGGCTTTATTGAAGAATGTATTAGATATATTTGTTGAAATTGGGATGGGGCAAATGGATCACTATGAGAATGATTTTGAATCTGCAATGCTTAAAGACACCTCTGCTTATTACTCTCAAAAGGCTTCTAATTGGATCCTAGAAGATTCTTGTCCTGATTACACGCTCAAGTGTGGTTTCTCAGTTGAGGAGTGCTTAAAACAGGAGAAAGATAGGGTTGCTCATTATTTGCACTCCAGTAGCGAGCCAAAGTTGTTAGAGAAAGTTCAACATGAGCTGTTATCTGTGTATGCAAACCAACTCCTCCAGAAAGAGCACTCTGGATGTCATGCTTTGCTTAGAGATGACAAGGTTGAAGATCTGTCACGGATGTTCATGCTATTTTCTAAAATACCTGAAGGCTTAGATCCTGTTTCCAGTATATTTAAGCAGCATGTTATCACTGAAGGTATGGTATTGGTTAAGCAGGCTGAAGATGCAGCTAGTACCAAAAGGGTCTGTACTGAACTTTTTATTTTGTCTATTGCTTGTTTTCCTTATCCTGTTAAATGCAAATCTCTACACTTGGTCTGCAGGAGCAGGTTTGACTGA 1872 0.4268 MKTRRPDSVISFFKAHGFSLSQITTIMRRIPVFLTCDPTNAILSKFQFLSSKGASPSDIVLMTTRSPRFLLRSLDHIVSLYELVRRFCPSDLKAIAYITAWPSSIADVRLAQNVKLLLDEGLTNANIHHLLRTRPSVLSSADLKKTVEEVKQLGFDPSHSYFSVVLLTKRAITKSKWEAKVDVLKKWGWSEQDFSEAFRRHPNFMLRSEDKLNAVMSFWISNLGWDSSALRIRPMLFGCSLEKRLIPRAKVVKYLLSNGLMKKNASIITPFSLTEELFLKKCVTCFEEKDRSRLLTLYQGGCFVSNLQLDIFIIMSKGITKLKNILEGLPEPLFSSKDYMMLYILLMTIPNNSMTSTRRYLKSTSNQREKHDEFMLRELVKRWANHKIMVRWLCCFFHYLDRYFVARRSLPPLNEVGLTCFRDRQIDRALLKNVLDIFVEIGMGQMDHYENDFESAMLKDTSAYYSQKASNWILEDSCPDYTLKCGFSVEECLKQEKDRVAHYLHSSSEPKLLEKVQHELLSVYANQLLQKEHSGCHALLRDDKVEDLSRMFMLFSKIPEGLDPVSSIFKQHVITEGMVLVKQAEDAASTKRVCTELFILSIACFPYPVKCKSLHLVCRSRFD* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0118 623 Gene3D Cullin Repeats 526 603 - -
Amo08g0118 623 PANTHER CULLIN 424 597 IPR045093 -
Amo08g0118 623 Gene3D Cullin Repeats 423 525 - -
Amo08g0118 623 Gene3D Cullin Repeats 314 422 - -
Amo08g0118 623 SMART mt_12 227 261 IPR003690 GO:0003690|GO:0006355
Amo08g0118 623 SMART mt_12 195 226 IPR003690 GO:0003690|GO:0006355
Amo08g0118 623 SMART mt_12 24 55 IPR003690 GO:0003690|GO:0006355
Amo08g0118 623 SMART mt_12 128 156 IPR003690 GO:0003690|GO:0006355
Amo08g0118 623 Pfam mTERF 10 156 IPR003690 GO:0003690|GO:0006355
Amo08g0118 623 Pfam mTERF 108 278 IPR003690 GO:0003690|GO:0006355
Amo08g0118 623 Gene3D Transcription termination factor 3, mitochondrial 101 289 IPR038538 -
Amo08g0118 623 Gene3D Transcription termination factor 3, mitochondrial 2 100 IPR038538 -
Amo08g0118 623 PANTHER CULLIN 3B 314 423 - -
Amo08g0118 623 SUPERFAMILY Cullin repeat-like 321 587 IPR016159 -
Amo08g0118 623 Pfam Cullin family 357 591 IPR001373 GO:0006511|GO:0031625
Amo08g0118 623 PANTHER CULLIN 3B 424 597 - -
Amo08g0118 623 PANTHER CULLIN 314 423 IPR045093 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0118 Amo-Chr8 2308896 2314442 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Amo08g0118 Cullin 4.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0118 K03347 - gmx:100793682 442.965