Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0112 ATGTATCCCAACCAAGCATTCTCTTCAGGATCCTATGCTGAGATGTTGTCTGGGAATCCTTTATTGTCTCATAACTACAACAATAATGGATCCGTTGGAGCACCAAACATGGTTGATCCATCATGTAATTCTTTTGTAGGAGGTGAACAAAATGTACATGGCCAAGGGTTATCTCTTAGTCTAGGTACATCTGTTCCTTCCTTTCAATACCAGTATGATGGAACTACTGCTGCTGCTGAATGCATGGTATCTTTATCTTCTGGAGGCTTTCATGAAAGTGCCAAAAGAGAGGGTTTGTACAATTCCAATAACTCTGATCCATGCATTCAAGGATCATTCTCAAACGGTGTATTGAACTCACACTATCTTAAGGCAGCACAGGAGTTACTTGATGAAATAGTTGGTGTCCGAAAGGCTTTGTTGAAGCAACCTGGAATGGAGAAACAAGAAAAGTTCAATAATGTCATTGATGGTGGCTCCAAGGATTCTGATGGAAAATGTAACAGTCAATCTCTGCAAAATAATGTCAAACCTCCTAATGAATTATCAGCTGAAGAACGCCAGAGTTTATTAGAAAAGAAGACAAAGCTTCTGACCTTGTTGGATGAGGTGGATAAGAAATACAGACAGTACTGTCATCAGATGCAGATTGTGGTGTCATCTTTCGACATGGTTGCCGGATGTGGAGCTGCTGAACCTTACACATGGCTTGCATTGCGCACCATATCTCGCCATTTTCGGAGCTTGCGCGATGCAATCAGTGGACAAATTCAAGTGATACAGAGGTGCCTTGGGGAACAAGAAGGGATACCGCGTCTTCGTTATGTTGATCAACAGCTTAGACAGCAAAAGGCACTTCAGCAACTTGGTGTAATGAGACAAGCTTGGAGGCCTCAGAGGGGTCTCCCCGAAACCTCTGTCTCAATACTTCGCGCTTGGCTTTTCGAGCATTTTCTTCACCCGTATCCCAAGGATTCAGAGAAAATCATGCTGGCAAGACAGACAGGCCTGACCAGAAACCAGGTGGCAAATTGGTTCATCAATGCACGGGTGCGGCTATGGAAGCCGATGGTTGAAGAAATGTATAAAGAAGAGTTTGGTGATTCTGATAACATAAGCTGCAATATTCCATCCGAAGGCATTGTGAAACGTAAAAGAGATGATGCTGAAGCCTCTGATAACAAAGGGGAAGATGATTCACAAGACAATTTAGTAACCATTGCTGATAGTGTCCAACAAGAAGGGCATTTTCATAAACATACATCATGTTCCGTGGATGAGAACAACAATAATGGGGTTTATAGTTGTGGAAGCATAATGGGTTGTAGCACTAGTCCTGCTGCATATGATTTTGCAGAGTTGGGTAACTTTACATCTACCATGGGTGGCCACGTGTCTCTTGCATTGGAATTGAGGAACTGTGAAAGGGATGGGTTTGGTGGCATGTCTGATAATGATGGCATCCACAAGAAAAGACGTAATCATAATCAGGGTTTGGCTTCTTCTTCTTCTTCTTCCTCCCCAGAGACTGATCACCTGCTAGATTATCATTTCACAGATTCAGGAAAGCAACAACACAGGTTCAGCAGCAACCCTCATCTTCTGCATGAGTTTGTTGTCTGA 1623 0.4295 MYPNQAFSSGSYAEMLSGNPLLSHNYNNNGSVGAPNMVDPSCNSFVGGEQNVHGQGLSLSLGTSVPSFQYQYDGTTAAAECMVSLSSGGFHESAKREGLYNSNNSDPCIQGSFSNGVLNSHYLKAAQELLDEIVGVRKALLKQPGMEKQEKFNNVIDGGSKDSDGKCNSQSLQNNVKPPNELSAEERQSLLEKKTKLLTLLDEVDKKYRQYCHQMQIVVSSFDMVAGCGAAEPYTWLALRTISRHFRSLRDAISGQIQVIQRCLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSDNISCNIPSEGIVKRKRDDAEASDNKGEDDSQDNLVTIADSVQQEGHFHKHTSCSVDENNNNGVYSCGSIMGCSTSPAAYDFAELGNFTSTMGGHVSLALELRNCERDGFGGMSDNDGIHKKRRNHNQGLASSSSSSSPETDHLLDYHFTDSGKQQHRFSSNPHLLHEFVV* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0112 540 SMART prehox3 111 255 IPR006563 -
Amo08g0112 540 MobiDBLite consensus disorder prediction 383 402 - -
Amo08g0112 540 Pfam Associated with HOX 117 254 IPR006563 -
Amo08g0112 540 ProSiteProfiles 'Homeobox' domain profile. 293 356 IPR001356 GO:0003677
Amo08g0112 540 SMART HOX_1 296 360 IPR001356 GO:0003677
Amo08g0112 540 MobiDBLite consensus disorder prediction 163 182 - -
Amo08g0112 540 MobiDBLite consensus disorder prediction 482 514 - -
Amo08g0112 540 MobiDBLite consensus disorder prediction 383 403 - -
Amo08g0112 540 Gene3D - 293 371 - -
Amo08g0112 540 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 39 492 - -
Amo08g0112 540 CDD homeodomain 296 357 IPR001356 GO:0003677
Amo08g0112 540 MobiDBLite consensus disorder prediction 497 512 - -
Amo08g0112 540 MobiDBLite consensus disorder prediction 151 183 - -
Amo08g0112 540 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 39 492 - -
Amo08g0112 540 SUPERFAMILY Homeodomain-like 297 364 IPR009057 -
Amo08g0112 540 Pfam Homeobox KN domain 313 352 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0112 Amo-Chr8 2224246 2227425 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0112 54 372 Homeobox Transcription Factor Family AT1G19700 53.933 3.21e-112 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Amo08g0112 POX 2e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0112 - - aip:107610078 951.429