Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo08g0101 | ATGCTAAACTCTCATACACCTCCTCCTCCTTCTTCAACCGTCGAATTCTCAACACACGATGATGACAAGCTCTTGCTCAAGACGTTTTTCTCTGCACAAGATTTCTACTCCAATAACAATACTACTTTCTGTGAAGTACCTTCTAGTAGTAGACGAAACTTTAGTCACATTTATCCCACCATAAATATCTCTAATAATATCAACAACCACTCATCACCATCACCGTCATCTTCTAGTAATAATATGACCTCGCACTCCTTGGATCTACCAGCTTTCATGACAACTACCACTCATGGCGGCGGTGCTGCTGCACATCAACAAGTAGATCTTGGTCTTGCTACATTTTCCGACAACCACCTTTCTTTTCATCTTGATCATCATCATAGCCACCACCACCGCCCTACTCACGCCTCCTCGCCGCGCTGTAGTAACTCTACTACTTCCACTACTGCTAATAATAACAGTCATCCATCACAATACTTCGTCTCCAATGGCACTGTGGACACAAAGAGACCCTGCACTTCGATAATGGACACAAAGGCTTCTCAATCTCTAACAGCATCCAAGAAATCACGATCCGAATCGCGCCCCTCATGCCCTCCCTTTAAGGTTAGGAAAGAGAAATTAGGAGATAGGATTGCGGCTCTTCAACAGTTGGTGGCTCCTTTTGGTAAGACAGACACAGCATCCGTACTTATGGAAGCAATCGGATACATAAAATTCCTTCAAAGCCAAGTAGAGACACTGAGCGTTCCATACATGAAGCCAACACAGAACCAAACCAACACCAGAATGATGCAAGGGGTTTCAGCCATAGCCGGCGGAAATGGGGAACCAAAGCAAGACCTTCGAAGTCGAGGCCTTTGTCTGGTGCCATTGTCGTGCATGTCTTACATAGCAGGTGATGCCAGCAATGACACGTGGCAACAATCAAACTTTGGAGGAGCAACTTAG | 954 | 0.4528 | MLNSHTPPPPSSTVEFSTHDDDKLLLKTFFSAQDFYSNNNTTFCEVPSSSRRNFSHIYPTINISNNINNHSSPSPSSSSNNMTSHSLDLPAFMTTTTHGGGAAAHQQVDLGLATFSDNHLSFHLDHHHSHHHRPTHASSPRCSNSTTSTTANNNSHPSQYFVSNGTVDTKRPCTSIMDTKASQSLTASKKSRSESRPSCPPFKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQSQVETLSVPYMKPTQNQTNTRMMQGVSAIAGGNGEPKQDLRSRGLCLVPLSCMSYIAGDASNDTWQQSNFGGAT* | 318 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo08g0101 | 317 | MobiDBLite | consensus disorder prediction | 138 | 166 | - | - | |
| Amo08g0101 | 317 | MobiDBLite | consensus disorder prediction | 178 | 195 | - | - | |
| Amo08g0101 | 317 | MobiDBLite | consensus disorder prediction | 125 | 166 | - | - | |
| Amo08g0101 | 317 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 193 | 242 | IPR011598 | GO:0046983 | |
| Amo08g0101 | 317 | MobiDBLite | consensus disorder prediction | 64 | 86 | - | - | |
| Amo08g0101 | 317 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 203 | 256 | IPR036638 | GO:0046983 | |
| Amo08g0101 | 317 | MobiDBLite | consensus disorder prediction | 178 | 203 | - | - | |
| Amo08g0101 | 317 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 30 | 302 | - | - | |
| Amo08g0101 | 317 | CDD | bHLH_AtbHLH_like | 200 | 250 | IPR045239 | - | |
| Amo08g0101 | 317 | Gene3D | - | 203 | 267 | IPR036638 | GO:0046983 | |
| Amo08g0101 | 317 | PANTHER | OS01G0105700 PROTEIN | 30 | 302 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo08g0101 | Amo-Chr8 | 1995970 | 1999043 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo08g0101 | 1 | 298 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT1G27660 | 43.590 | 1.07e-55 | 185 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo08g0101 | - | - | aip:107610095 | 520.005 |