Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0088 ATGGATTCAACTTGTGCAGCACTGAGTGCCACCAATCTAGTTCAACTTAGTAACAAAGTTGGAAGAAACAGAGCAACTCTGTTCTGGGGTGAATCTAAAATAGCACCTCAAATAAGAACAACAACAACGTTGTTGAGTGTTCAATCATCCAAGCCTGCAACTGCACACGCTGTTCTCACATCAGATGTGAATCAAGAGTCCACGGCATTCCAGGAGGAACATAATTTTGAAACCCTTGAAGCAGACCCAAAAGGTGTAGCTTCTATCATTTTGGGTGGAGGTGCTGGAACTCGCCTCTTTCCTCTTACTGGCAGAAGAGCCAAACCTGCGGTTCCAATAGGAGGGTGTTATAGACTCATTGATATCCCTATGAGCAATTGCATCAATAGTGGCATCAAGAAAATATTCATTTTAACTCAGTTCAACTCTTTCTCCCTCAATCGTCACTTGTCTCGCTTATACAGCTTTGGAAATGGCCTCAGTTTTGGGGATGGTTTTGTGGAGGTCTTGGCTGCAACTCAAACACCTGGAGAAACAGGGAAGAAATGGTTCCAAGGGACAGCTGATGCCGTGAGGCAATTTATATGGGTCTTTGAGGATGCCAAGAACAAGAATATTGAGAATATATTGATACTTTCTGGTGATCATCTTTACCGAATGGACTATATGGACTTTGTTCAGAAACATATCGACACAAATGCTGATATCACAGTTTCGTGTGTGCCCATGGATGATAGCCGCGCATCAGACTATGGGCTGATGAAAATTGATAAAACAGGACGGATTGTACAGTTTGCAGAAAAGCCAAAGGGATCTGATCTGAAGGAAATGAAAGTTGACACCACTGTCCTCGGGTTATCTGCAGAAGAAGCAAAGAAACATCCTTACATTGCATCAATGGGTGTCTATGTCTTTAGAACTGAAACCCTCCTGAAACTACTAAGATGGAGCTGTTCTTCGTGCAATGACTTTGGATCTGAAATAATCCCATCTGCTGTGAAAGATCACAATGTCCAGGCATATTTGTTTAATGATTACTGGGAAGATATTGGAACTATAAAGTCCTTCTTCGACGCAAATTTGGCCCTTACAGAGCAGCCTCCAAAATTTGAATTCTATGATCCAAAGACTCCTTTCTTCACTTCCCCAAGGTTCCTACCACCCACTAAAGTAGAAAAATGCAAGATCGTGGATGCAATTATTTCTCATGGGTGCTTCTTGAGGGAGTGCAGCGTTCAACATTCAATTGTTGGGGTGCGCTCACGTCTAGAGTCCGGTGTGGAGCTTAAGGATACCATGATGATGGGTGCTGATTATTATCAAACTGAGTCTGAAATTGCATCCTTTCTAGCAGAAGGAAAGGTTCCAATTGGTGTGGGAGAGAATACCAAAATCAGGAATTGTATCATTGACAAGAATGCCAAGATAGGAAGAAATGTGATTATTGCAAATGGTGATGGTGTGGAAGAAGCAGACAGGCCTAATGAAGGATTCTACATTAGGTCTGGCATCACAGTTGTTCTAAAAAATGCAACAATCAAAGATGGAACAGTAATATGA 1560 0.4199 MDSTCAALSATNLVQLSNKVGRNRATLFWGESKIAPQIRTTTTLLSVQSSKPATAHAVLTSDVNQESTAFQEEHNFETLEADPKGVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDIPMSNCINSGIKKIFILTQFNSFSLNRHLSRLYSFGNGLSFGDGFVEVLAATQTPGETGKKWFQGTADAVRQFIWVFEDAKNKNIENILILSGDHLYRMDYMDFVQKHIDTNADITVSCVPMDDSRASDYGLMKIDKTGRIVQFAEKPKGSDLKEMKVDTTVLGLSAEEAKKHPYIASMGVYVFRTETLLKLLRWSCSSCNDFGSEIIPSAVKDHNVQAYLFNDYWEDIGTIKSFFDANLALTEQPPKFEFYDPKTPFFTSPRFLPPTKVEKCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVELKDTMMMGADYYQTESEIASFLAEGKVPIGVGENTKIRNCIIDKNAKIGRNVIIANGDGVEEADRPNEGFYIRSGITVVLKNATIKDGTVI* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0088 519 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC 1 519 - -
Amo08g0088 519 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 68 384 IPR029044 -
Amo08g0088 519 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 1 519 IPR011831 GO:0005978|GO:0008878
Amo08g0088 519 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 92 111 IPR005836 GO:0005978|GO:0008878
Amo08g0088 519 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 87 483 IPR011831 GO:0005978|GO:0008878
Amo08g0088 519 Gene3D Hexapeptide repeat proteins 385 519 - -
Amo08g0088 519 CDD ADP_Glucose_PP 89 350 - -
Amo08g0088 519 Pfam Nucleotidyl transferase 88 365 IPR005835 GO:0009058|GO:0016779
Amo08g0088 519 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 298 308 IPR005836 GO:0005978|GO:0008878
Amo08g0088 519 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 183 191 IPR005836 GO:0005978|GO:0008878
Amo08g0088 519 CDD LbH_G1P_AT_C 387 513 - -
Amo08g0088 519 SUPERFAMILY Nucleotide-diphospho-sugar transferases 88 480 IPR029044 -
Amo08g0088 519 SUPERFAMILY Trimeric LpxA-like enzymes 381 519 IPR011004 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0088 Amo-Chr8 1834548 1838828 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0088 K00975 - gmx:100793757 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3990 16 151880046 151885038 Amo08g0088 08 1834548 1838828 PCT
Amo08g0088 08 1834548 1838828 Amo16g3990 16 151880046 151885038 PCT