Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0029 ATGTCATTCACAGGAACTCTTGATAAATGCACTGCTTGTGATAAGACTGTTTATGTGGTTGATTTGTTAACTCTTGAAGGCATACCTTACCATAAAAATTGCTTCAAATGCAGTCACTGCAAGGGAACTCTCACGATGAGCACATACTCCTCAATGGATGGAGTCCTCTATTGCAGGCCACATTTTGAACAGCTCTTCAAGGAATCTGGCAACTTCAGCAAGAACTTCCAGAATGCAAAGTCTTCTGAGAAAAATGACCTGAACAGGACCCCAAGTAGACTCTCTTCCATGTTCAGTGGAACCTTGGACAAATGTTCGGTTTGCTCAAAAACAGTGTATCCACTGGAGAAGGTGACACTGGAGGGAGAATGCTTTCACAAGAGTTGCTTTAGGTGTGCTCATGCAGGGTGCCCACTGACACATTCTTCCTATGCTGCCTTAGATGGTGTCCTCTATTGTAGGCACCACTTTGCACAACTCTTCATGGAGAAAGGGAACTACAGCCATGTCCTCCAAGCTGCTGCTCACAAGAGGACTAACTCCTCTGATCCTTCCGAGATCCCCGACGAGACCGTGCAGCAGCCGGAGCCTGAGGCGGAACCTGAAGCCGACAAGGAAGAGAAGAAAGCGGAGGATGAAACCGAGGAGGAGAAGAAAGAAAAAGAGGAAGAAGAAGAGGCTTCCTCTTGA 690 0.4696 MSFTGTLDKCTACDKTVYVVDLLTLEGIPYHKNCFKCSHCKGTLTMSTYSSMDGVLYCRPHFEQLFKESGNFSKNFQNAKSSEKNDLNRTPSRLSSMFSGTLDKCSVCSKTVYPLEKVTLEGECFHKSCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYSHVLQAAAHKRTNSSDPSEIPDETVQQPEPEAEPEADKEEKKAEDETEEEKKEKEEEEEASS* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0029 229 Gene3D Cysteine Rich Protein 5 72 - -
Amo08g0029 229 SMART lim_4 9 61 IPR001781 -
Amo08g0029 229 SMART lim_4 104 156 IPR001781 -
Amo08g0029 229 Coils Coil 202 227 - -
Amo08g0029 229 Pfam LIM domain 105 160 IPR001781 -
Amo08g0029 229 Pfam LIM domain 10 65 IPR001781 -
Amo08g0029 229 MobiDBLite consensus disorder prediction 174 189 - -
Amo08g0029 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 97 130 - -
Amo08g0029 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Amo08g0029 229 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Amo08g0029 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 131 170 - -
Amo08g0029 229 MobiDBLite consensus disorder prediction 174 229 - -
Amo08g0029 229 MobiDBLite consensus disorder prediction 198 216 - -
Amo08g0029 229 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Amo08g0029 229 ProSiteProfiles LIM domain profile. 103 163 IPR001781 -
Amo08g0029 229 PANTHER OS06G0237300 PROTEIN 1 205 IPR045268 GO:0051015
Amo08g0029 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Amo08g0029 229 Gene3D Cysteine Rich Protein 101 169 - -
Amo08g0029 229 CDD LIM1_SF3 6 68 - -
Amo08g0029 229 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0029 Amo-Chr8 868802 870338 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Amo08g0029 LIM 1.8e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0029 - K09377 gmx:100800234 353.599