LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo08g0028	ATGCATATTCAGTTTTCAGCTCAAAAGCTCCATATCCATTTCAAATTTCCCGGTTGTAGCTTGCCGCCCTCAAAAATGGTGGTGGATCGTTTCGATTCTTGCATTGCTTTTGGTGGGAAGGGTTTTGGTTGTGCTTTTCTCGGGAACTCAAGAACTATCCTGAAAGCGCGGTTTAGCGGCATGAACAAGATTGGTATTGCTGCTGCATGTAGTAGTAGTAGTAGTTGGAGGAGTAATAATTCAAGATTGGCTTGTGTAGGAGAGTTCAACTTTTCAAATGTGAAGAGAATAGGGAAACTTTGTGGCAACAGTTCTAATTTTCGCGTTGTGGGAGGTAGGGGATTTTTGTCTAGGTGCCAGGGTGATGATGATTCTTTAGCATATATTAATGGCAATGGCCGGAATATTGATAATGCTGGAGGKGGTCCRAAYAAGGTGGGTTCTGATTTGGGTTCCATTTCAGGAGCTGCATCGAGTGAACCCTTGGAAGWCGAAAGAACAATTGGGGGTGAAATAAAGCAAGAGGTACAGACAGTGGATGAATTGAAAGAACTGTTGCAAAAGGCCTTGAAGGAACTCGAAGTTGCTAGGCATAATAGTGCCATGTATGAGGAGAGGGTCAAGAAGATATCGGAGAGTGCGATTTCCTTTCAGGATGAAGCATCAAGAGCATGGAATGATGTTAATTCTACTCTTGATATCATCCAGGAAATTGTGGGTGAAGAATTTGTTGCCAAGGAAGCTGTTCAGAAAGCGACTATGGCTCTTTCTTTTGCCGAGGCTAGGCTTCAAGTAGCCATGGAGTCTTTGGAGGTTGTAAAAGGAACTTATGATCCTCGGTCACAAGGTGCCAAAGAGAGTAATGGCGATGAAGATATATTGGAAGAGGAGCAATTGCTTGTGGTTGCTCAAGAAGATATCAAGGAGTGTCAGTCAAATTTAGCGAATTGCGAGACAGAGCTAAGGTGCTTGCAAAAAAGAAAGGAGGATTTGCAGAATGAAGTGAACAAGTTGCATGAAATTGCGGAAAAGGCCCAGATGAATGCAGTAAAAGCCGAGGAGGACGTCACAAACATAATGCTTTTAGCTGAGCAAGCTGTTGCTGATGAACTTAAGGCTGCACAAGTCGTAAATGATGCAGAGATTGCATTATCAAAAGCAGATAAGTCTGCCTCTAGCGTTATTGCTGACTCTGGTATCACTCTACAAGAACAAGAGGTTTTGGACGATCCTAAGGAAGAGGTGGTTCAAAATGTTTCTGGCGATGACACTGTTGATACAGACACAGATTCCCAAATTGACAATGAAACTTTGCTTGGCAAGCAATCATCAGACAAGTTTTCTGATAAAACCAGCCAAGTTATTGAAGATACGGCACAGTCTGATTATCTGAGTGATCATGAAAATGGACAGTTAGTCTTAGACCCATCTAAAGAAGCTGAAGTTGAAGTAGAGAAAATAATGAATTCAGTTCAAATGAAAAAACAGGAAACACAGAAAGATATAAGAGACAATCCACCACTTGTTCCCAAGGCATTGTTGAATAAGTCTTCCAGATTTTTTCCTGCATCATTCTTCTCTTTTACTATCGAAGGTGATGATTATACACCAGAATCATTTTTCCAAAGTTTCGTGGAGTCAGCACGGAAGCTGTTACCCAAGCTAGTTATTGGGATATTGTTACTTGGAGGGATTGCCTTCTATGCAAACAGAGCAGAGAGGAGTGCGCAATTACTTCAGCAACCAGAAGTAATTACAACCACTGCTGAAGAAGTTTCCACAAGTGCAAAACCTTTGGTTAGACAGCTTCAGAATCTCCCCACGAGGATCAAGAATATTATTGCATCATTACCTGATCAAGAGGTGGATGAGGAGGAAGCATCCCTTTTTGATATGCTTTGGTTATTACTTGCTAGTGTTATTTTTGTGCCAGTGTTTCAGAAAATCCCTGGAGGCAGTCCCGTTCTTGGTTACTTGGCTGCTGGTATCCTTATTGGGCCCTATGGTCTGTCCATCATTCGTCATGTTCATGGGACGAAAGCAATAGCTGAATTTGGAGTTGTTTTCCTGTTATTCAATATTGGCCTTGAGCTCTCTTTTGAAAGGCTTAGTTCAATGAAGAAATATGTCTTTGGATTAGGCTCAGCTCAGGTTTTGGTGACTGCTGTTGTTGTTGGCCTAGTAGCTCATTATGTTTGTGGTCAAGCAGGTCCTGCTGCTATTGTCATTGGGAATGGCCTCGCATTATCATCAACCGCTGTTGTTCTGCAAGTATTACAGGAGAGAGGTGAGAGCACATCACGCCATGGACGAGCCACATTTTCTGTGTTACTTTTTCAGGACTTGGCGGTTGTGGTCTTGCTAATTCTCATACCTCTTATTTCACCTAATTCATCTAAAGGAGGGGTTGGTTTTCAAGCTATTGCTGAAGCTCTTGGTCTGGCTGCTGTTAAGGCAGCAGTTGCCATCACTGTCATTATTGCAGGTGGACGATTGCTACTTCGACCAATATATAGGCAGATTGCAGAAAATCAAAATGCAGAAATATTTTCTGCCAATACACTCTTTGTTATTCTTGGGACAAGTCTTCTCACAGCCAGGGCAGGGCTTTCCATGGCACTAGGAGCATTTTTGGCTGGTTTACTACTAGCAGAAACTGAATTTTCCTTACAAGTGGAATCTGACATTGCTCCATATCGTGGTCTTCTGTTAGGTCTGTTCTTTATGACGGTTGGAATGTCAATTGATCCAAAACTTCTTGTTTCAAAATTTAAAGTCATTATGGGGACGCTGGCACTCTTACTATGTGGCAAGACACTGTTGATTACTGTGATTGGTAGAATTTTCGGTATTTCACTCATTAATGCCATAAGAGTTGGCCTCCTTCTTGCTCCTGGGGGAGAATTTGCATTTGTGGCCTTTGGTGAAGCTGTTAATCAGGGCATAATGTCTTCCCAGATGTCCTCTCTGCTGTTTCTTCTTGTGGGAATCTCAATGGCCCTCACACCATGGCTAGCTGAAGGAGGACAGCTGATTGCTTCCCGTTTTGAGCTACATGATGTTAGAAGTTTATTACCTGTAGAAAGTGAGACAGACGATCTGCAAGATCATATCATTATTTGTGGATTTGGACGAGTTGGCCAGATCATTGCACAACTTCTTTCGGAGCGACTTATTCCTTTTGTTGCACTAGACGTCAGAAGTGATAGAGTGGCAATTGGGCGTGCCCTGGATCTCCCAGTGTACTTCGGAGATGCTGGTAGCCGAGAGGTCCTACATAAGGTCGGGGCTGAAAGGGCGAGCGCTGCTGCAGTAACTCTAGATTCTCCTGGTGCAAATTATAGAACAGTTTGGGCTTTAAGCAAGCACTTCCCGAAAGTGAAGACCTTCGTCCGTGCTCATGATGTTGATCATGGATTGAACTTAGAAAAGGCTGGAGCCACTGCTGTTGTCCCAGAGACCTTAGAACCAAGTCTTCAACTAGCAGCTGCAGTGCTAGCTCAGGCTAAACTTCCAACAACAGAGATTGCAGCAATCATAAATGAATTCAGATCACGCCATTTAGCCGAGCTCACCGAACTATGTGAAGCAAGTGGAAGTTCTCTTGGATATGGATTCAACAGAGCTACGACTATGAGCAAACCCAAATCTCAATCCTCAGATTTCTCAGATGATAACCAAGTCTCTGATGGAACAGTGGCAATATGA	3708	0.4296	MHIQFSAQKLHIHFKFPGCSLPPSKMVVDRFDSCIAFGGKGFGCAFLGNSRTILKARFSGMNKIGIAAACSSSSSWRSNNSRLACVGEFNFSNVKRIGKLCGNSSNFRVVGGRGFLSRCQGDDDSLAYINGNGRNIDNAGGGPNKVGSDLGSISGAASSEPLEXERTIGGEIKQEVQTVDELKELLQKALKELEVARHNSAMYEERVKKISESAISFQDEASRAWNDVNSTLDIIQEIVGEEFVAKEAVQKATMALSFAEARLQVAMESLEVVKGTYDPRSQGAKESNGDEDILEEEQLLVVAQEDIKECQSNLANCETELRCLQKRKEDLQNEVNKLHEIAEKAQMNAVKAEEDVTNIMLLAEQAVADELKAAQVVNDAEIALSKADKSASSVIADSGITLQEQEVLDDPKEEVVQNVSGDDTVDTDTDSQIDNETLLGKQSSDKFSDKTSQVIEDTAQSDYLSDHENGQLVLDPSKEAEVEVEKIMNSVQMKKQETQKDIRDNPPLVPKALLNKSSRFFPASFFSFTIEGDDYTPESFFQSFVESARKLLPKLVIGILLLGGIAFYANRAERSAQLLQQPEVITTTAEEVSTSAKPLVRQLQNLPTRIKNIIASLPDQEVDEEEASLFDMLWLLLASVIFVPVFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSFERLSSMKKYVFGLGSAQVLVTAVVVGLVAHYVCGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKAAVAITVIIAGGRLLLRPIYRQIAENQNAEIFSANTLFVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLVSKFKVIMGTLALLLCGKTLLITVIGRIFGISLINAIRVGLLLAPGGEFAFVAFGEAVNQGIMSSQMSSLLFLLVGISMALTPWLAEGGQLIASRFELHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERASAAAVTLDSPGANYRTVWALSKHFPKVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPTTEIAAIINEFRSRHLAELTELCEASGSSLGYGFNRATTMSKPKSQSSDFSDDNQVSDGTVAI*	1236

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo08g0028	1235	MobiDBLite	consensus disorder prediction	1208	1235	-	-
	Amo08g0028	1235	Pfam	Sodium/hydrogen exchanger family	634	1005	IPR006153	GO:0006812\|GO:0015299\|GO:0016021\|GO:0055085
	Amo08g0028	1235	PANTHER	K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC	36	1235	-	-
	Amo08g0028	1235	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	1034	1175	IPR036291	-
	Amo08g0028	1235	Coils	Coil	172	206	-	-
	Amo08g0028	1235	Gene3D	-	1033	1197	-	-
	Amo08g0028	1235	TIGRFAM	2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family	636	916	IPR004771	GO:0006812\|GO:0008324\|GO:0016021
	Amo08g0028	1235	ProSiteProfiles	RCK N-terminal domain profile.	1037	1159	IPR003148	GO:0006813
	Amo08g0028	1235	Gene3D	-	625	1011	IPR038770	-
	Amo08g0028	1235	MobiDBLite	consensus disorder prediction	420	445	-	-
	Amo08g0028	1235	Coils	Coil	477	497	-	-
	Amo08g0028	1235	Coils	Coil	293	355	-	-
	Amo08g0028	1235	Pfam	TrkA-N domain	1038	1151	IPR003148	GO:0006813
	Amo08g0028	1235	PANTHER	K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED	36	1235	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo08g0028	Amo-Chr8	857118	865593	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo08g0028	114	1235	Inorganic Solute Cotransporters	AT4G00630	68.098	0.0	1371

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo08g0028	-		-	adu:107460050	2216.81