Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0027 ATGAGGCCTACAATGATGCTTAGGGCTCTCAACAAGCAGTTCATTGGATTGTTCTCGGACAAAAGCTTGACTAGTGCATCCAATGCTGCTGTGAAGAAGCCACTGCCGCTCGTGGCCTCTTGCAAACCAGCGTTCATTGATGCATTCCTTCACAAGATGAAAAACAACAAGACCCTTCTCATGAACAAGACCATTTGGTCTCGGAGATCCACCATCTTGCCCGAATTTGTGGATACCACTGTCAGAATCTACAATGGCAAAACCACCGTTCGCTGCAAGATCAATGAGGGAAAAGTTGGTCACAAATTCGGGGAGTTTGCACTCACCAGGAAGCGCAAGACCAGAGAACAACAATCCAATGCTAAGAATGTCAAGCCCAAGAAAAAGAAGTGA 393 0.4631 MRPTMMLRALNKQFIGLFSDKSLTSASNAAVKKPLPLVASCKPAFIDAFLHKMKNNKTLLMNKTIWSRRSTILPEFVDTTVRIYNGKTTVRCKINEGKVGHKFGEFALTRKRKTREQQSNAKNVKPKKKK* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0027 130 MobiDBLite consensus disorder prediction 108 130 - -
Amo08g0027 130 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 38 125 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo08g0027 130 PRINTS Ribosomal protein S19 family signature 85 97 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo08g0027 130 PRINTS Ribosomal protein S19 family signature 97 112 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo08g0027 130 PRINTS Ribosomal protein S19 family signature 65 84 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo08g0027 130 Pfam Ribosomal protein S19 52 113 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo08g0027 130 MobiDBLite consensus disorder prediction 108 123 - -
Amo08g0027 130 SUPERFAMILY Ribosomal protein S19 42 114 IPR023575 GO:0003735|GO:0005840|GO:0006412
Amo08g0027 130 ProSitePatterns Ribosomal protein S19 signature. 85 109 IPR020934 GO:0003723
Amo08g0027 130 Gene3D 30s Ribosomal Protein S19; Chain A 6 124 IPR023575 GO:0003735|GO:0005840|GO:0006412
Amo08g0027 130 PANTHER 40S RIBOSOMAL PROTEIN S19, MITOCHONDRIAL 38 125 - -
Amo08g0027 130 Hamap 30S ribosomal protein S19 [rpsS]. 6 123 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0027 Amo-Chr8 854559 856274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0027 6 111 Cytoplasmic Ribosomal Protein Gene Family AT5G09490 25.472 3.05e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0027 K02965 - gmx:100305608 166.777