Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0014 ATGACGACGGAGCCACCACCAATGCCACTTTCCGGCGAGGAAGCCGCCACCTTATCGGCTTTGGACTTAGAAACAGCACCTCAACCACCCGCACCTCCCCTAAAAAAGAAGCGAAACCTCCCTGGAATGCCAGATCCGGATGCTGAGGTGATTGCTTTGTCGCCAAAGACGCTGTTAGCGACGAACCGTTTCGTGTGCGAGATCTGCAACAAGGGGTTCCAGAGGGACCAGAATCTCCAGCTCCACCGGCGGGGACACAACCTCCCGTGGAAGCTCCGGCAGCGTGCCACCAAGGAGGTACGAAAGAGGGTGTACGTGTGCCCCGAACCTTCGTGTGTCCACCACAATCCTTCCAGGGCGCTCGGCGACCTCACCGGCATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGCTCAAATGCGAACGTTGCTCAAAGAAATACGCCGTTCAGTCCGATTGGAAGGCACACATGAAGACCTGCGGAACCAGAGAGTACAGATGCGGTTGCGGAACCTTGTTCTCTAGGAGGGATAGCTTTGTTACGCATAGAGCTTTTTGCGATGCGTTAGCTGAAGAGAGTGCTAAGGCTCAAACCCTAAGCACTGATGACAAGGACGGTGTTGGTGCTGGTGTGACTGCGGCTTCTTCTTCATCGCCGCCGCAGCCGCCGCTTACTCCGTCGACTTCGGTGGTGTCTCCGACTCTGTCAATTCAGAGCTCAGAAATTCCGGAAAATGCGACGAGGCTGTCACCGCCAACAACATGTGTTGCGAAAGCTGTGACAACTAGCACTGTTCTTGCAACTGTGTTGGCATCCTCAGCCGGAGCAGCAGCACCATCAACCACTTCATTCCCCAACGTCACGGCAGCCACGTCACTCTCCCTCTCCGTGCCACTCTATCTCTCCAACAACGTTAACGACCTTCGCCATCACTACACTGCATGTCCACAGCCATCAACAACAGCTGCACTGTCTGCCACCGCATTGCTCCAGAAGGCAGCTCAAATGGGTGCAGCTTCTTCCAACACGTCGCTTCTTCGAGGTTTAGGCTTAGCCACGTCATCTACGGGATATCATCCTCAAGACGAGAGCGGCATTGACAACCCAATAATGCAATGGAACATGAGCAGCCATGTGAAGCAAGAGAATCCGAGTTTGGCAGATCATAACCTTGGGCTTGGACTTCCATGTGGGGATCCGGGTTTTGCAGATGTGATGATGGGGTCCCCTCCCATGACCCGGGATCTTCTTGGTCTTGGAATCGGTGGCAATGGCGGTGATAATGTTAGCAGGGGTGGTCTTTCTGCTTTATTAACCTCTTTTGGAGGGAACTTCGATTCATCTGGAGATGCAGGTGGAGTTCGCCACCAGTAG 1380 0.5413 MTTEPPPMPLSGEEAATLSALDLETAPQPPAPPLKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRATKEVRKRVYVCPEPSCVHHNPSRALGDLTGIKKHFCRKHGEKKLKCERCSKKYAVQSDWKAHMKTCGTREYRCGCGTLFSRRDSFVTHRAFCDALAEESAKAQTLSTDDKDGVGAGVTAASSSSPPQPPLTPSTSVVSPTLSIQSSEIPENATRLSPPTTCVAKAVTTSTVLATVLASSAGAAAPSTTSFPNVTAATSLSLSVPLYLSNNVNDLRHHYTACPQPSTTAALSATALLQKAAQMGAASSNTSLLRGLGLATSSTGYHPQDESGIDNPIMQWNMSSHVKQENPSLADHNLGLGLPCGDPGFADVMMGSPPMTRDLLGLGIGGNGGDNVSRGGLSALLTSFGGNFDSSGDAGGVRHQ* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0014 459 Gene3D Classic Zinc Finger 117 199 - -
Amo08g0014 459 MobiDBLite consensus disorder prediction 1 46 - -
Amo08g0014 459 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 22 451 - -
Amo08g0014 459 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 451 - -
Amo08g0014 459 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Amo08g0014 459 SMART c2h2final6 64 86 IPR013087 -
Amo08g0014 459 SMART c2h2final6 105 135 IPR013087 -
Amo08g0014 459 SMART c2h2final6 140 160 IPR013087 -
Amo08g0014 459 Pfam Zinc-finger of C2H2 type 64 86 - -
Amo08g0014 459 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Amo08g0014 459 SUPERFAMILY beta-beta-alpha zinc fingers 63 161 IPR036236 -
Amo08g0014 459 MobiDBLite consensus disorder prediction 199 235 - -
Amo08g0014 459 Gene3D Classic Zinc Finger 44 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0014 Amo-Chr8 574874 578931 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0014 10 440 IDZ Gene Family AT3G50700 50.442 4.61e-127 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo08g0014 zf-met 0.0033 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0014 K25869 - gmx:100818095 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0014 08 574874 578931 Amo17g2267 17 116082967 116086857 hybridization