Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g2489 ATGGCCATGTTGGACGTTGACTTTAAGCTCAGCCTCTCTCTTCCCGGTACTCAAACCGGAGCCACCAAACGCTGCCGCCGCTTTTCGGAGGAGGACACCGTTGATCTTCTTCATCCCAAGGCACAGACGGTGGGGTGGCCGCCGGTGATGAGGGCAAACAGAAAGTGTGGCGTGAAGGTGGGTGTGGACGGAGCACCATATCTAAGAAAAGTGGATCTTGAAGTGTATGAAAGTTATGAACAGCTCTTCAAGGCATTGGAGACTATGTTTTGTTGCTCAACCATTATTTGTAATGAGAATAAGGTGATGGATAATTATATGCCAACTTATGAGGACAAAGACGGTGATTGGATGTTAGTTGGTGATGTACCTTGGGAGATGTTCGTTGAATCATGCAAGAGAATAAGACTCATGATAAAGTAG 423 0.4657 MAMLDVDFKLSLSLPGTQTGATKRCRRFSEEDTVDLLHPKAQTVGWPPVMRANRKCGVKVGVDGAPYLRKVDLEVYESYEQLFKALETMFCCSTIICNENKVMDNYMPTYEDKDGDWMLVGDVPWEMFVESCKRIRLMIK* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g2489 140 SUPERFAMILY CAD & PB1 domains 52 139 - -
Amo07g2489 140 ProSiteProfiles PB1 domain profile. 55 140 IPR000270 GO:0005515
Amo07g2489 140 PANTHER AUXIN-RESPONSIVE PROTEIN IAA15 34 139 - -
Amo07g2489 140 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 34 139 IPR003311 GO:0005634|GO:0006355
Amo07g2489 140 Pfam AUX/IAA family 55 138 IPR033389 -
Amo07g2489 140 Gene3D - 51 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g2489 Amo-Chr7 71733654 71735023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g2489 58 135 B3 DNA Binding Superfamily AT2G46530 38.462 1.67e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo07g2489 AUX_IAA 1e-34 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g2489 K14484 - gmx:100500488 157.918